Enzyme Models

These models and simulations have been tagged “Enzyme”.

Insight diagram

Bond Graph Kinetic Modeling Metabolic Map by J LeFevre  http://www.systemdynamics.org/conferences/2004/SDS_2004/PAPERS/379LEFEV.pdf

See also IM-857 and IM-2235 for more detail

Michaelis Menten Enzyme Metabolic Map
Insight diagram

Hannon and Ruth Modeling Dynamic Biological Systems p67 adapted to Bond Graph Kinetic Modeling Metabolic Map Layout of insight IM-855 See also IM-2235 for unfolding version

Catalyzed Reaction (Michaelis Menten) 2
Insight diagram

Hannon and Ruth Modeling Dynamic Biological Systems p67 adapted to Bond Graph Kinetic Modeling Metabolic Map Alternate Layout of insight IM-857 Here Join and Split Flows are unfolded rather than using folders around the Stocks.

Catalyzed Reaction (Michaelis Menten) 2 with split and join
Insight diagram

Bond Graph Kinetic Modeling Metabolic Map by J LeFevre  http://www.systemdynamics.org/conferences/2004/SDS_2004/PAPERS/379LEFEV.pdf

See also IM-857 and IM-2235 for more detail

Clone of Michaelis Menten Enzyme Metabolic Map
Insight diagram

Bond Graph Kinetic Modeling Metabolic Map by J LeFevre  http://www.systemdynamics.org/conferences/2004/SDS_2004/PAPERS/379LEFEV.pdf

See also IM-857 and IM-2235 for more detail

Clone of Michaelis Menten Enzyme Metabolic Map
Insight diagram

System Zoo Z111 H Bossel p47 a variant of Michaelis Menten Enzyme Kinetics. See also IM-854 for Hannon and Ruth and IM-855 for receptor version and IM-856 for a bond graph view

Density Dependent Growth (Michaelis-Menten)
Insight diagram

Bond Graph Kinetic Modeling Metabolic Map by J LeFevre  http://www.systemdynamics.org/conferences/2004/SDS_2004/PAPERS/379LEFEV.pdf

See also IM-857 and IM-2235 for more detail

Clone of Michaelis Menten Enzyme Metabolic Map
Insight diagram
Protein conformance change based on Ed Gallaher and Jim Rogers 2021 Forrester Award Lecture ISDC
Protein Dynamics
Insight diagram

Hannon and Ruth Modeling Dynamic Biological Systems p67 adapted to Bond Graph Kinetic Modeling Metabolic Map Alternate Layout of insight IM-857 Here Join and Split Flows are unfolded rather than using folders around the Stocks.

Clone of Catalyzed Reaction (Michaelis Menten) 2 with split and join
Insight diagram

Hannon and Ruth Modeling Dynamic Biological Systems p67 adapted to Bond Graph Kinetic Modeling Metabolic Map Alternate Layout of insight IM-857 Here Join and Split Flows are unfolded rather than using folders around the Stocks.

Clone of Catalyzed Reaction (Michaelis Menten) 2 with split and join
Insight diagram

Hannon and Ruth Modeling Dynamic Biological Systems p67 adapted to Bond Graph Kinetic Modeling Metabolic Map Alternate Layout of insight IM-857 Here Join and Split Flows are unfolded rather than using folders around the Stocks.

Clone of Catalyzed Reaction (Michaelis Menten) 2 with split and join
Insight diagram

Hannon and Ruth Modeling Dynamic Biological Systems p67 adapted to Bond Graph Kinetic Modeling Metabolic Map Alternate Layout of insight IM-857 Here Join and Split Flows are unfolded rather than using folders around the Stocks.

Author: (Michaelis Menten), version 2 with split and join

Clone of GRIPS25_06 Catalyzed Reaction
10 months ago
Insight diagram

Hannon and Ruth Modeling Dynamic Biological Systems p67 adapted to Bond Graph Kinetic Modeling Metabolic Map Alternate Layout of insight IM-857 Here Join and Split Flows are unfolded rather than using folders around the Stocks.

Author: (Michaelis Menten), version 2 with split and join

Clone of GRIPS25_06 Catalyzed Reaction
10 months ago
Insight diagram

Combination of 2 reactions, using the same enzyme.

Hannon and Ruth Modeling Dynamic Biological Systems p67 adapted to Bond Graph Kinetic Modeling Metabolic Map Alternate Layout of insight IM-857 Here Join and Split Flows are unfolded rather than using folders around the Stocks.

2x Catalyzed Reaction (Michaelis Menten) 2 with split and join
10 months ago
Insight diagram

Hannon and Ruth Modeling Dynamic Biological Systems p67 adapted to Bond Graph Kinetic Modeling Metabolic Map Alternate Layout of insight IM-857 Here Join and Split Flows are unfolded rather than using folders around the Stocks.

Author: (Michaelis Menten), version 2 with split and join

Clone of GRIPS25_06 Catalyzed Reaction
9 months ago
Insight diagram

Hannon and Ruth Modeling Dynamic Biological Systems p67 adapted to Bond Graph Kinetic Modeling Metabolic Map Layout of insight IM-855 See also IM-2235 for unfolding version

Clone of Catalyzed Reaction (Michaelis Menten) 2
11 months ago
Insight diagram

Hannon and Ruth Modeling Dynamic Biological Systems p67 adapted to Bond Graph Kinetic Modeling Metabolic Map Layout of insight IM-855 See also IM-2235 for unfolding version

X Clone of Catalyzed Reaction (Michaelis Menten) 2
11 months ago
Insight diagram

Combination of 2 reactions, using the same enzyme.

Hannon and Ruth Modeling Dynamic Biological Systems p67 adapted to Bond Graph Kinetic Modeling Metabolic Map Alternate Layout of insight IM-857 Here Join and Split Flows are unfolded rather than using folders around the Stocks.

Clone of 2x Catalyzed Reaction (Michaelis Menten) 2 with split and join
10 months ago
Insight diagram

Hannon and Ruth Modeling Dynamic Biological Systems p67 adapted to Bond Graph Kinetic Modeling Metabolic Map Alternate Layout of insight IM-857 Here Join and Split Flows are unfolded rather than using folders around the Stocks.

Author: (Michaelis Menten), version 2 with split and join

GRIPS25_06 Catalyzed Reaction
3 10 months ago