Coronavirus | Insight Maker

Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured in

https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:

Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death

Andrew E Long

40

Here we have a basic SEIR model and we will investigate what changes would be appropriate for modelling the 2019 Coronavirus

SEIR Infectious Disease Model for COVID-19

Rolf Häsänen

606

SARS-CoV-19 spread in different countries

- please adjust variables accordingly

Italy

elderly population (>65): 0.228
estimated undetected cases factor: 4-11
starting population size: 60 000 000
high blood pressure: 0.32 (gbe-bund)
heart disease: 0.04 (statista)
free intensive care units: 3 100

Germany

elderly population (>65): 0.195 (bpb)
estimated undetected cases factor: 2-3 (deutschlandfunk)
starting population size: 83 000 000
high blood pressure: 0.26 (gbe-bund)
heart disease: 0.2-0.28 (herzstiftung)
free intensive care units: 5 880

France

elderly population (>65): 0.183 (statista)
estimated undetected cases factor: 3-5
starting population size: 67 000 000
high blood pressure: 0.3 (fondation-recherche-cardio-vasculaire)
heart disease: 0.1-0.2 (oecd)
free intensive care units: 3 000

As you wish

numbers of encounters/day: 1 = quarantine, 2-3 = practicing social distancing, 4-6 = heavy social life, 7-9 = not caring at all // default 2
practicing preventive measures (ie. washing hands regularly, not touching your face etc.): 0.1 (nobody does anything) - 1 (very strictly) // default 0.8
government elucidation: 0.1 (very bad) - 1 (highly transparent and educating) // default 0.9
Immunity rate (due to lacking data): 0 (you can't get immune) - 1 (once you had it you'll never get it again) // default 0.4

Key

Healthy: People are not infected with SARS-CoV-19 but could still get it
Infected: People have been infected and developed the disease COVID-19
Recovered: People just have recovered from COVID-19 and can't get it again in this stage
Dead: People died because of COVID-19
Immune: People got immune and can't get the disease again
Critical recovery percentage: Chance of survival with no special medical treatment

SARS-CoV-19 model

Lucia Vega Resto

60

The SEIRS(D) model for the purpose of experimenting with the phenomena of viral spread. I use it for COVID-19 simulation.

SEIR - COVID-19 (v.1)

Remigiusz Kinas

56

Modelo epidemiológico simples

SIR: Susceptíveis - Infectados - Recuperados

Clique aqui para ver um vídeo com a apresentação sobre a construção e uso deste modelo. É recomendável ver o vídeo num computador de mesa para se poder ver os detalhes do modelo.

Dados iniciais de infectados, recuperados e óbitos para diversos países (incluindo o Brasil) podem ser obtidos aqui neste site.

Modelo SIR simples - Covid 19

Paulo Villela

34

Model di samping adalah model SEIR yang telah dimodifikasi sehingga dapat digunakan untuk menyimulasikan perkembangan penyebaran COVID-19.

SEIR Model for COVID-19 in Indonesia

Muhammad Iqbal M

31

A system dynamic model for the COV19 spreading on Italy

COV19

Fabio Musmeci

6

Model di samping adalah model SEIR yang telah dimodifikasi sehingga dapat digunakan untuk menyimulasikan perkembangan penyebaran COVID-19.

SEIR Model for COVID-19 in Indonesia - v2

Ngaliman Abu Ibrahim

SARS-CoV-19 spread in different countries

- please adjust variables accordingly

Italy

elderly population (>65): 0.228
estimated undetected cases factor: 4-11
starting population size: 60 000 000
high blood pressure: 0.32 (gbe-bund)
heart disease: 0.04 (statista)
free intensive care units: 3 100

Germany

elderly population (>65): 0.195 (bpb)
estimated undetected cases factor: 2-3 (deutschlandfunk)
starting population size: 83 000 000
high blood pressure: 0.26 (gbe-bund)
heart disease: 0.2-0.28 (herzstiftung)
free intensive care units: 5 880

France

elderly population (>65): 0.183 (statista)
estimated undetected cases factor: 3-5
starting population size: 67 000 000
high blood pressure: 0.3 (fondation-recherche-cardio-vasculaire)
heart disease: 0.1-0.2 (oecd)
free intensive care units: 3 000

As you wish

numbers of encounters/day: 1 = quarantine, 2-3 = practicing social distancing, 4-6 = heavy social life, 7-9 = not caring at all // default 2
practicing preventive measures (ie. washing hands regularly, not touching your face etc.): 0.1 (nobody does anything) - 1 (very strictly) // default 0.8
government elucidation: 0.1 (very bad) - 1 (highly transparent and educating) // default 0.9
Immunity rate (due to lacking data): 0 (you can't get immune) - 1 (once you had it you'll never get it again) // default 0.4

Key

Healthy: People are not infected with SARS-CoV-19 but could still get it
Infected: People have been infected and developed the disease COVID-19
Recovered: People just have recovered from COVID-19 and can't get it again in this stage
Dead: People died because of COVID-19
Immune: People got immune and can't get the disease again
Critical recovery percentage: Chance of survival with no special medical treatment

Clone of SARS-CoV-19 model

Steven D'Alessandro

SARS-CoV-19 spread in different countries

- please adjust variables accordingly

Italy

elderly population (>65): 0.228
estimated undetected cases factor: 4-11
starting population size: 60 000 000
high blood pressure: 0.32 (gbe-bund)
heart disease: 0.04 (statista)

Germany

elderly population (>65): 0.195 (bpb)
estimated undetected cases factor: 2-3 (deutschlandfunk)
starting population size: 83 000 000
high blood pressure: 0.26 (gbe-bund)
heart disease: 0.2-0.28 (herzstiftung)

France

elderly population (>65): 0.183 (statista)
estimated undetected cases factor: 3-5
starting population size: 65 000 000
high blood pressure: 0.3 (fondation-recherche-cardio-vasculaire)
heart disease: 0.1-0.2 (oecd)

As you wish

numbers of encounters/day: 1 = quarantine, 2-3 = practicing social distancing, 4-6 = heavy social life, 7-9 = not caring at all
practicing preventive measures (ie. washing hands regularly, not touching your face etc.): 0.1 (nobody does anything) - 1 (very strictly)
government elucidation: 0.1 (very bad) - 1 (highly transparent and educating)
Immunity rate (due to lacking data): 0 (you can't get immune) - 1 (once you had it you'll never get it again)

Key

Healthy: People are not infected with SARS-CoV-19 but could still get it
Infected: People have been infected and developed the disease COVID-19
Recovered: People just have recovered from COVID-19 and can't get it again in this stage
Dead: People died because of COVID-19
Immune: People got immune and can't get the disease again

Clone of SARS-CoV-19 model

Mark Dav

Here we have a basic SEIR model and we will investigate what changes would be appropriate for modelling the 2019 Coronavirus

Clone of SEIR Infectious Disease Model for COVID-19

Philippe Garvie

Check how different times of recovery and deths in cases of covid-19 infulence 2 key mortality indicators:

Overall mortalityr ate (ratio of all deaths to all cases)

Resolved cases mortality rate (ratio of all deaths to recovered cases)

Assumed delays are:

5 weeks for recovery cases

2 weeks for death cases

Delays are built into conveyor stocks, so cannot be adjusted by slider

keep in mind Insigth uses similar but made-up numbers and linear flow of new cases (in opposition to exponential in real world)

Understanding Covid-19 mortality

Cezary Zając

Model di samping adalah model SEIR yang telah dimodifikasi sehingga dapat digunakan untuk menyimulasikan perkembangan penyebaran COVID-19.

Clone of SEIR Model for COVID-19 in Indonesia

Nanang Hari Setyawan

Ausbreitung von SARS-CoV-19 in verschiedenen Ländern
- bitte passen Sie die Variablen über die Schieberegler weiter unten entsprechend an

Italien

    ältere Bevölkerung (>65): 0,228
    Faktor der geschätzten unentdeckten Fälle: 0,6
    Ausgangsgröße der Bevölkerung: 60 000 000
    hoher Blutdruck: 0,32 (gbe-bund)
    Herzkrankheit: 0,04 (statista)
    Anzahl der Intensivbetten: 3 100

Deutschland

    ältere Bevölkerung (>65): 0,195 (bpb)
    geschätzte unentdeckte Fälle Faktor: 0,2 (deutschlandfunk)
    Ausgangsgröße der Bevölkerung: 83 000 000
    hoher Blutdruck: 0,26 (gbe-bund)
    Herzkrankheit: 0,2-0,28 (Herzstiftung)
    Anzahl der Intensivbetten: 5 880

Frankreich

    ältere Bevölkerung (>65): 0,183 (statista)
    Faktor der geschätzten unentdeckten Fälle: 0,4
    Ausgangsgröße der Bevölkerung: 67 000 000
    Bluthochdruck: 0,3 (fondation-recherche-cardio-vasculaire)
    Herzkrankheit: 0,1-0,2 (oecd)
    Anzahl der Intensivbetten: 3 000

Je nach Bedarf:

    Anzahl der Begegnungen/Tag: 1 = Quarantäne, 2-3 = soziale Distanzierung , 4-6 = erschwertes soziales Leben, 7-9 = überhaupt keine Einschränkungen // Vorgabe 2
    Praktizierte Präventivmassnahmen (d.h. sich regelmässig die Hände waschen, das Gesicht nicht berühren usw.): 0.1 (niemand tut etwas) - 1 (sehr gründlich) // Vorgabe 0.8
    Aufklärung durch die Regierung: 0,1 (sehr schlecht) - 1 (sehr transparent und aufklärend) // Vorgabe 0,9
    Immunitätsrate (aufgrund fehlender Daten): 0 (man kann nicht immun werden) - 1 (wenn man es einmal hatte, wird man es nie wieder bekommen) // Vorgabe 0,4

Schlüssel

    Anfällige: Menschen sind nicht mit SARS-CoV-19 infiziert, könnten aber infiziert werden
    Infizierte: Menschen sind infiziert worden und haben die Krankheit COVID-19
    Geheilte: Die Menschen haben sich gerade von COVID-19 erholt und können es in diesem Stadium nicht mehr bekommen
    Tote: Menschen starben wegen COVID-19
    Immunisierte: Menschen wurden immun und können die Krankheit nicht mehr bekommen
    Kritischer Prozentsatz der Wiederherstellung: Überlebenschance ohne spezielle medizinische Behandlung

SARS-CoV-19 Modell von Lucia Vega Resto

Hans Kratz

5

SARS-CoV-19 spread in different countries

- please adjust variables accordingly

Italy

elderly population (>65): 0.228
estimated undetected cases factor: 4-11
starting population size: 60 000 000
high blood pressure: 0.32 (gbe-bund)
heart disease: 0.04 (statista)
free intensive care units: 3 100

Germany

elderly population (>65): 0.195 (bpb)
estimated undetected cases factor: 2-3 (deutschlandfunk)
starting population size: 83 000 000
high blood pressure: 0.26 (gbe-bund)
heart disease: 0.2-0.28 (herzstiftung)
free intensive care units: 5 880

France

elderly population (>65): 0.183 (statista)
estimated undetected cases factor: 3-5
starting population size: 67 000 000
high blood pressure: 0.3 (fondation-recherche-cardio-vasculaire)
heart disease: 0.1-0.2 (oecd)
free intensive care units: 3 000

As you wish

numbers of encounters/day: 1 = quarantine, 2-3 = practicing social distancing, 4-6 = heavy social life, 7-9 = not caring at all // default 2
practicing preventive measures (ie. washing hands regularly, not touching your face etc.): 0.1 (nobody does anything) - 1 (very strictly) // default 0.8
government elucidation: 0.1 (very bad) - 1 (highly transparent and educating) // default 0.9
Immunity rate (due to lacking data): 0 (you can't get immune) - 1 (once you had it you'll never get it again) // default 0.4

Key

Healthy: People are not infected with SARS-CoV-19 but could still get it
Infected: People have been infected and developed the disease COVID-19
Recovered: People just have recovered from COVID-19 and can't get it again in this stage
Dead: People died because of COVID-19
Immune: People got immune and can't get the disease again
Critical recovery percentage: Chance of survival with no special medical treatment

Clone of SARS-CoV-19 model

Tisa Monita

A simple ABM example illustrating how the SEIR model works. It can be a basis for experimenting with learning the impact of human behavior on the spread of a virus, e.g. COVID-19.

Clone of SEIR ABM MODEL

Pradeesh Kumar

SARS-CoV-19 spread in different countries

- please adjust variables accordingly

Italy

elderly population (>65): 0.228
estimated undetected cases factor: 4-11
starting population size: 60 000 000
high blood pressure: 0.32 (gbe-bund)
heart disease: 0.04 (statista)
free intensive care units: 3 100

Germany

elderly population (>65): 0.195 (bpb)
estimated undetected cases factor: 2-3 (deutschlandfunk)
starting population size: 83 000 000
high blood pressure: 0.26 (gbe-bund)
heart disease: 0.2-0.28 (herzstiftung)
free intensive care units: 5 880

France

elderly population (>65): 0.183 (statista)
estimated undetected cases factor: 3-5
starting population size: 67 000 000
high blood pressure: 0.3 (fondation-recherche-cardio-vasculaire)
heart disease: 0.1-0.2 (oecd)
free intensive care units: 3 000

As you wish

numbers of encounters/day: 1 = quarantine, 2-3 = practicing social distancing, 4-6 = heavy social life, 7-9 = not caring at all // default 2
practicing preventive measures (ie. washing hands regularly, not touching your face etc.): 0.1 (nobody does anything) - 1 (very strictly) // default 0.8
government elucidation: 0.1 (very bad) - 1 (highly transparent and educating) // default 0.9
Immunity rate (due to lacking data): 0 (you can't get immune) - 1 (once you had it you'll never get it again) // default 0.4

Key

Healthy: People are not infected with SARS-CoV-19 but could still get it
Infected: People have been infected and developed the disease COVID-19
Recovered: People just have recovered from COVID-19 and can't get it again in this stage
Dead: People died because of COVID-19
Immune: People got immune and can't get the disease again
Critical recovery percentage: Chance of survival with no special medical treatment

Clone of SARS-CoV-19 model

Tony Zambito

Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured in

https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:

Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death

Jake Moore

Modelo epidemiológico simples

SIR: Susceptíveis - Infectados - Recuperados

Dados iniciais do Brasil em 04 Abr 2020

Fonte:

https://www.worldometers.info/coronavirus/country/brazil/

Clone of Modelo SIR simples - Covid 19

Jose Francisco Junqueira reis

Model di samping adalah model SEIR yang telah dimodifikasi sehingga dapat digunakan untuk menyimulasikan perkembangan penyebaran COVID-19.

Modified by Rio dan Pras

Clone of SEIR Model for COVID-19 in Indonesia - case study SLEMAN

Imam Fajriyanto

A simple ABM example illustrating how the SEIR model works. It can be a basis for experimenting with learning the impact of human behavior on the spread of a virus, e.g. COVID-19.

Clone of SEIR ABM MODEL

NOEMI ZERAICK MONTEIRO

Initial data from:

Italian data [link], as of Mar 28

Incubation estimation [link]

Model focuses on outbreak dynamics and control, this version ignores symptom onset to hospital admission and the rest of recovery dynamics.

Italian COVID 19 outbreak control V2

Gabo HN

5

france data from:

France data [link], as of April 30

Incubation estimation [link]

Model focuses on outbreak dynamics and control, this version ignores symptom onset to hospital admission and the rest of recovery dynamics.

Clone of France COVID 19 outbreak control V2

Arpan Mitra

Modelo epidemiológico simples

SIR: Susceptíveis - Infectados - Recuperados

Clique aqui para ver um vídeo com a apresentação sobre a construção e uso deste modelo. É recomendável ver o vídeo num computador de mesa para se poder ver os detalhes do modelo.

Dados iniciais de infectados, recuperados e óbitos para diversos países (incluindo o Brasil) podem ser obtidos aqui neste site.

Clone of Modelo SIR simples - Covid 19

Patrick Pereira Salgado

Coronavirus Models