System-Medicine Models

These models and simulations have been tagged “System-Medicine”.

Insight diagram

Minimal model of glucose kinetics by Bergman, used to calculate insulin sensitivity from an Intravenous Glucose Tolerance Test (IVGTT). Plasma insulin I(t) enters a remote compartment X(t) where it is active in accelerating glucose G(t) disappearance into the periphery and liver, and inhibiting hepatic glucose production. Adapted from Minimal Models for Glucose and Insulin Kinetics: A Matlab implementation by Natal van Riel, Eindhoven University of Technology 2004 by Mark Heffernan.

V1 Glucose minimal model
Insight diagram

WIP Thyroid HPA axis dynamics based on Kohanin 2022 article and Ch3.5 of Uri Alon's System Medicine book. A series of secrete and grow physiological circuits 

Thyroid dynamics
Insight diagram
Función de pulmones
Insight diagram
Modelo de proceso de la glucosa
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WIP Physiological circuits insight integrated after other articles on inflammation fibrosis and innate immunity pictures insight 

Multiscale integration of Inflammation and fibrosis 2
Insight diagram

Minimal model of glucose kinetics by Bergman, used to calculate insulin sensitivity from an Intravenous Glucose Tolerance Test (IVGTT). Plasma insulin I(t) enters a remote compartment X(t) where it is active in accelerating glucose G(t) disappearance into the periphery and liver, and inhibiting hepatic glucose production. Adapted from Minimal Models for Glucose and Insulin Kinetics: A Matlab implementation by Natal van Riel, Eindhoven University of Technology 2004 by Mark Heffernan.

Clone of V1 Glucose minimal model
9 months ago
Insight diagram

Minimal model of glucose kinetics by Bergman, used to calculate insulin sensitivity from an Intravenous Glucose Tolerance Test (IVGTT). Plasma insulin I(t) enters a remote compartment X(t) where it is active in accelerating glucose G(t) disappearance into the periphery and liver, and inhibiting hepatic glucose production. Adapted from Minimal Models for Glucose and Insulin Kinetics: A Matlab implementation by Natal van Riel, Eindhoven University of Technology 2004 by Mark Heffernan.

Clone of V1 Glucose minimal model
Insight diagram

Minimal model of glucose kinetics insight as a physiology circuit  and the more general secrete and grow notif from Uri Alon's System Medicine added. The circuits are then expressed in System Dynamics maps which distinguish between links and flows and add both where required

System Medicine Physiological Circuits Glucose Secrete and Grow
Insight diagram

simpler clone of secrete and grow insight with added beta cell autoimmune surveillance physiological circuit from Ch 4 of Uri Alon's System Medicine Book

System Medicine Physiological Circuits beta cell autoimmunity
Insight diagram

Minimal model of glucose kinetics by Bergman, used to calculate insulin sensitivity from an Intravenous Glucose Tolerance Test (IVGTT). Plasma insulin I(t) enters a remote compartment X(t) where it is active in accelerating glucose G(t) disappearance into the periphery and liver, and inhibiting hepatic glucose production. Adapted from Minimal Models for Glucose and Insulin Kinetics: A Matlab implementation by Natal van Riel, Eindhoven University of Technology 2004 by Mark Heffernan.

Clone of V1 Glucose minimal model
Insight diagram

Minimal model of glucose kinetics by Bergman, used to calculate insulin sensitivity from an Intravenous Glucose Tolerance Test (IVGTT). Plasma insulin I(t) enters a remote compartment X(t) where it is active in accelerating glucose G(t) disappearance into the periphery and liver, and inhibiting hepatic glucose production. Adapted from Minimal Models for Glucose and Insulin Kinetics: A Matlab implementation by Natal van Riel, Eindhoven University of Technology 2004 by Mark Heffernan.

Clone of V1 Glucose minimal model
Insight diagram

Minimal model of glucose kinetics by Bergman, used to calculate insulin sensitivity from an Intravenous Glucose Tolerance Test (IVGTT). Plasma insulin I(t) enters a remote compartment X(t) where it is active in accelerating glucose G(t) disappearance into the periphery and liver, and inhibiting hepatic glucose production. Adapted from Minimal Models for Glucose and Insulin Kinetics: A Matlab implementation by Natal van Riel, Eindhoven University of Technology 2004 by Mark Heffernan.

Glucose minimal model Cambio#1
Insight diagram

Periodic table of disease patterns and physiological circuits   from Ch 9 of Uri Alon's System Medicine Book Circuit motifs are modified to facilitate building system dynamics simulations

System Medicine Physiological Circuits Disease Patterns
Insight diagram

Minimal model of glucose kinetics by Bergman, used to calculate insulin sensitivity from an Intravenous Glucose Tolerance Test (IVGTT). Plasma insulin I(t) enters a remote compartment X(t) where it is active in accelerating glucose G(t) disappearance into the periphery and liver, and inhibiting hepatic glucose production. Adapted from Minimal Models for Glucose and Insulin Kinetics: A Matlab implementation by Natal van Riel, Eindhoven University of Technology 2004 by Mark Heffernan.

Glucose minimal model Cambio#3
Insight diagram

Tissue repair process of Inflammation with fibrosis or healing physiological circuits  from Ch 5 of Uri Alon's System Medicine Book

System Medicine Physiological Circuits Inflammation and fibrosis
Insight diagram

Minimal model of glucose kinetics to match description by Bergman 2021 article and Ch1 simulation exercise of Uri Alon's System Medicine book. Layout similar to the Insightmaker BIG Model 

Glucose minimal model V2
Insight diagram

Minimal model of glucose kinetics by Bergman, used to calculate insulin sensitivity from an Intravenous Glucose Tolerance Test (IVGTT). Plasma insulin I(t) enters a remote compartment X(t) where it is active in accelerating glucose G(t) disappearance into the periphery and liver, and inhibiting hepatic glucose production. Adapted from Minimal Models for Glucose and Insulin Kinetics: A Matlab implementation by Natal van Riel, Eindhoven University of Technology 2004 by Mark Heffernan.

Glucose minimal model Modificacion#2
Insight diagram
WIP Extension of the simplified Glucose minimal model (IM) as described in Ch 2 of Uri Alon's System Medicine Book  Values from Mohammed 2019 article. Copied from Mark Heffernan's Stella model (to be hosted)
BIG Beta cell Insulin Glucose Model
Insight diagram

WIP Physiological circuits insight integrated with other articles on inflammation fibrosis and innate immunity

Multiscale integration of Inflammation and fibrosis