Agent based Modeling Simulation for Pandemic COVID-19 Disease
Agent based Modeling Simulation for Pandemic COVID-19 Disease
8 months ago
Very basic LV model, looking at the relationship between COVID-19 mitigation behavior and COVID-19 cases
Very basic LV model, looking at the relationship between COVID-19 mitigation behavior and COVID-19 cases
 Here we have a basic SEIR model and we will investigate what changes would be appropriate for modelling the 2019 Coronavirus 

Here we have a basic SEIR model and we will investigate what changes would be appropriate for modelling the 2019 Coronavirus 

687 3 months ago
 Here we have a basic SEIR model and we will investigate what changes would be appropriate for modelling the 2019 Coronavirus.  The initial parametrization is based on the suggested current data. The initial population is set for Catalonia.

Here we have a basic SEIR model and we will investigate what changes would be appropriate for modelling the 2019 Coronavirus.

The initial parametrization is based on the suggested current data. The initial population is set for Catalonia.

 Modelling the demand for health and care resources resulting from the Covid-19 outbreak using an SEIR model.
Modelling the demand for health and care resources resulting from the Covid-19 outbreak using an SEIR model.

Description:   This is a system dynamics model of COVID-19 outbreak in Burnie which shows the process of infections and how  government responses, impact on the local economy.       First part is outbreak model, we can know that when people is infected, there are two situations. One is that he recov
Description:

This is a system dynamics model of COVID-19 outbreak in Burnie which shows the process of infections and how  government responses, impact on the local economy.  

First part is outbreak model, we can know that when people is infected, there are two situations. One is that he recovers from  treatment, but even if he recovered, the immunity loss rate increase, makes him to become infected again. The other situation is death. In this outbreak, the government's health policies (ban on non-essential trips, closure of non-essential retailers, limits on public gatherings and quarantine )  help to reduce the spread of the COVID-19 new cases. Moreover,  government legislation is dependent on  number of COVID-19 cases and testing rates. 

 Second part: the model of Govt legislation and economic impact. Gov policy can help to reduce infection rate and local economy at same way. The increase of number of COVID-19 cases has a negative impact on local Tourism industry and economic growth rate. On the other hand, Govt legislation also can be change when reported COVID-19 case are less or equal to 10.






This model is cloned thru an Agent-Based Modeling Simulation of "Covid-19 (ABM)_VHK" Model by Venkata Habiram Koppaka last April 2020 for presenting the Pandemic COVID-19 Disease. This ABM Simulation aims to represent the trend of COVID-19 infection and death rate (dynamics) at Puerto Princesa City,
This model is cloned thru an Agent-Based Modeling Simulation of "Covid-19 (ABM)_VHK" Model by Venkata Habiram Koppaka last April 2020 for presenting the Pandemic COVID-19 Disease. This ABM Simulation aims to represent the trend of COVID-19 infection and death rate (dynamics) at Puerto Princesa City, PALAWAN using the June 3, 2021 data of the CESU-PPC.
  INTRODUCTION
  

  COVID-19  

 Coronavirus which was named COVID-19 is a
respiratory disease which affects the lungs of the infected person and thus
making such people vulnerable to other diseases such as pneumonia. It was first
discovered in Wuhan China in December 2019 and since then has spread

INTRODUCTION

COVID-19

Coronavirus which was named COVID-19 is a respiratory disease which affects the lungs of the infected person and thus making such people vulnerable to other diseases such as pneumonia. It was first discovered in Wuhan China in December 2019 and since then has spread across the world affecting more than 40 million people from which over one million have died.

In the early discovery of the COVID-19, there were measures that were put in place with the help World Health Organization (WHO). They recommended a social distance of 1.5 meters to 2 meters to curb the spread since the scientist warned that COVID-19 can be carried in the droplets when someone breathes or cough. Another measure which was advised by WHO was wearing of mask, especially when people are in group. Wearing of mask would ensure that someone’s droplets do not leave their mouth or nose when they breathe or cough. It also help one from breathing in the virus which believed to be contagious and airborne.

The World Health Organization also advised on washing of the hand and avoiding frequent touching of the face. People mostly use their hand to touch surfaces which mad their hand the greatest harbor of the disease. Therefore, washing hands with soap will kill and wash away the virus from the hands. Avoiding touching of face also will prevent people from contracting the disease since the virus is believed to enter the body through openings such as eye, nose and mouth.

Another measure as a precaution from contracting the disease was to avoid hand shaking, hugging, kissing and any other thing which would bring people together. These were measures put to ensure that COVID-19 do not move from one person to another because of its airborne nature and the fact that it can be carried from the mouth or nose droplets.

Healthcare workers, in most of the countries, were provided with Personal Protective Equipment (PPEs) which helped them to protect themselves from contracting the virus. Healthcare workers were at the forefront in combating the disease since they were the people receiving the sick, including the ones with the virus. This exposed them to COVID-19 more than anyone hence more care was needed for them. Their PPEs comprised of white overall covering the whole body from head to toes. It also includes face mask and googles worn to prevent anything getting in their eyes. Their hands also were covered with gloves which were removed occasionally to avoid concentration of the virus on one glove.

COVID-19 affected many economies across the world as it greatly affected the human economic activities across the world. Due to the nature and how it spread, COVID-19 lead many countries to lockdown the country as we know it. Travelling was stopped as many countries feared the surge of the virus due to many people travelling form the countries which are already greatly affected. Another reason which travelling was hampered was due to the fact that the virus could spread among the travelers in an airplane. There were no proper measures to ensure social distance in the airplane and many people feared travelling from fear of contracting the disease.

This greatly affected the economy of many countries including great economies like USA. Tourism industry was the one affected the most as many country mostly depend on foreign travelers as their tourist. Many countries do not have proper domestic tourism structure and therefore depend on visitors who travels from foreign countries. Such countries have their economies greatly affected since the earnings from tourism either gone down or was not there at all.

Apart from locking down the country from foreigners, many major cities across the world were under lockdown. This means that even the citizens of the country were neither allowed in or out of the city. This restricted movement of people affecting greatly the human economic activities as many businesses were closed down especially transport businesses. The movement of goods from one places to another was affected making business difficult to carry out. Many people who dealt in perishable agricultural products count losses as their farm produced were destroyed because of lack of wider market. Some countries banned some businesses such as importing second hand clothes since it was believed that they could harbor the virus. Most of the meeting places such as sporting events and pubs were closed down affecting greatly the people who were involved in such businesses.

Across the world, schools were closed. Schools contain students in large numbers which could affect many students across the world. Learning was temporary stopped as different countries were finding ways of curbing the virus.

Scientist are busy like bees across the world to find the vaccine for the diseases that have ravage many countries and above all, they are trying to find the cure. Many countries have carried out their trial of vaccines with the hope to find an effective vaccine for the virus.

Meanwhile it is necessary to find ways by which the virus can be controlled so that it doesn’t spread to a point where it come out of control. Some of the measures put by the WHO has been highlighted above, but these measures need to be studied to ensure that measures which are more effective are affected at great heights. I therefore, have created a model in Insight Maker to check how these measures prove their effectiveness over time.

 This insight began as a March 22nd Clone of "Italian COVID 19 outbreak control"; thanks to  Gabo HN  for the original insight. The following links are theirs:      Initial data from:  Italian data [ link ] (Mar 4)  Incubation estimation [ link ]        Andy Long   Northern Kentucky University  May

Initial data from:
Italian data [link] (Mar 4)
Incubation estimation [link]

Northern Kentucky University
May 2nd, 2020

This is an update of our model from April 9th, 2020. As we prepare for our final exam, I read a story in The Guardian about Italy's struggle to return to normalcy. The final paragraphs:

During the debate in the Senate on Thursday, the opposition parties grilled Conte. Ex-prime minister Matteo Renzi, who has called for less restraint in the reopening, remarked, “The people in Bergamo and Brescia who are gone, those who died of the virus, if they could speak, they’d tell us to relaunch the country for them, in their honour.”

Renzi’s controversial statement was harshly criticised by doctors who warned that the spread of the disease, which, as of Thursday, had killed almost 30,000 people in the country and infected more than 205,000 [ael: my emphasis], was not over and that a misstep could take the entire country back to mid-March coronavirus levels.

“We risk a new wave of infections and outbreaks if we’re not careful,” said Tullio Prestileo, an infectious diseases specialist at Palermo’s Benefratelli Hospital. “If we don’t realise this, we could easily find ourselves back where we started. In that case, we may not have the strength to get back up again.”

I have since updated the dataset, to include total cases from February 24th to May 2nd. I went to Harvard's Covid-19 website for Italy  and and then to their daily updates, available at github. I downloaded the regional csv file for May 2nd,  which had regional totals (21 regions); I grabbed the column "totale_casi" and did some processing to get the daily totals from the 24th of February to the 2nd of May.

The cases I obtained in this way matched those used by Gabo HN.

The initial data they used started on March 3rd (that's the 0 point in this Insight).

You can get a good fit to the data through April 9th by choosing the following (and notice that I've short-circuited the process from the Infectious to the Dead and Recovered). I've also added the Infectious to the Total cases.

The question is: how well did we do at modeling this epidemic through May 2nd (day 60)? And how can we change the model to do a better job of capturing the outbreak from March 3rd until May 2nd?

Incubation Rate:  .025
R0: 3
First Lockdown: IfThenElse(Days() == 5, 16000000, 0)
Total Lockdown: IfThenElse(Days() >= 7, 0.7,0)

(I didn't want to assume that the "Total Lockdown" wasn't leaky! So it gets successively tighter, but people are sloppy, so it simply goes to 0 exponentially, rather than completely all at once.)

deathrate: .01
recoveryrate: .03

"Death flow": [deathrate]*[Infectious]
"Recovery flow": [recoveryrate]*[Infectious]

Total Reported Cases: [Dead]+[Surviving / Survived]+[Infectious]



Resources:
  Sike Liu's model on COVID-19 & Burnie Economy       This model contains three parts, the first part stimulates the COVID-19 pandemic outbreak in Burnie; the second part describes possible government policies on pandemic control; and the third part examines the possible negative impact on econo
Sike Liu's model on COVID-19 & Burnie Economy

 

This model contains three parts, the first part stimulates the COVID-19 pandemic outbreak in Burnie; the second part describes possible government policies on pandemic control; and the third part examines the possible negative impact on economy growth from those policies.


Assumptions:

1. The state boarder has already been closed and all new arrivals in Burnie need to enter a fixed period of quarantine. And the quarantine rate measures the strength of the government policy on quarantine (such as length and method).

2. Patient zero refers to the initial number of undetected virus carriers in the community.

3. Government policies such as social distancing, compulsory mask and lock down could effectively reduce community’s exposure to the virus.

4. Social distancing and compulsory mask will be triggered when COVID-19 cases reach and beyond 10 and lock down will be triggered when cases reach and beyond 1000.

4. High vaccine rate, on the other hand, could effectively reduce the exposed people’s chance of getting infected.

5. Only when vaccine rate reaches 0.6 and beyond, then the spread of COVID-19 will be significantly slowed.

6. Vaccine can’t 100% prevent the infection of the virus.

7.The infected people will need to be tested so that they could be counted as COVID-19 cases and the test rate decides the percentage of infected people being tested.

8. After people recover, there are chances of them losing immunity and the immunity lost rate measures that.

9. The COVID-19 cases could also be detected at quarantine facilities, and the quarantine process will effectively reduce the Infection and exposure rate.

10. Social distancing and compulsory mask wearing are considered as light restrictions in this model and will have less impact on both supply and demand side, and lockdown is considered as heavy restriction which will have strong negative impact on economy growth in this model.

11. In this model, light restrictions will have more negative impacts on the demand side compared to the supply side.

12. In this model, both supply side and demand side will power the economy growth.

 

Interest hints:

The vaccine could significantly reduce the spread of COVID-19 and effectively reduce the number of COVID-19 cases.

The number of the COVID-19 cases will eventually be stabilized when the number of susceptible is running out in a community (reached community immunity).

Quarantine could slightly reduce the cases numbers, but the most effective way is to reduce the number of new arrivals.

Model ini dirancang untuk membuat model tentang penyebaran Covid-19 dan vaksinasi di Kabupaten Sleman pada November 2022     Model ini dibuat untuk memenuhi tugas kelompok dari matakuliah Metode Penyelesaian Masalah dan Pemodelan, atas nama :   Sabilla Halimatus Mahmud   Nurul Widyastuti Muhammad Na
Model ini dirancang untuk membuat model tentang penyebaran Covid-19 dan vaksinasi di Kabupaten Sleman pada November 2022

Model ini dibuat untuk memenuhi tugas kelompok dari matakuliah Metode Penyelesaian Masalah dan Pemodelan, atas nama :
Sabilla Halimatus Mahmud
Nurul Widyastuti
Muhammad Najib



A simple ABM example illustrating how the SEIR model works. It can be a basis for experimenting with learning the impact of human behavior on the spread of a virus, e.g. COVID-19.
A simple ABM example illustrating how the SEIR model works. It can be a basis for experimenting with learning the impact of human behavior on the spread of a virus, e.g. COVID-19.
 Introduction; 
 This model shows COVID-19 outbreak in Burnie have some impact for local economy situation and government policy. The main government policy is lockdown during the spreading period which can help reduce the infected rate, and also increase the test scale to help susceptible confirm t

Introduction;

This model shows COVID-19 outbreak in Burnie have some impact for local economy situation and government policy. The main government policy is lockdown during the spreading period which can help reduce the infected rate, and also increase the test scale to help susceptible confirm their situation.


Variables;

Infection rate, Death rate, Recovery rate, test rate, susceptible, immunity rate, economy growth rate

These variables are influenced by different situation.


When cases over 10, government will implement lockdown policy.


Conclusion;

When cases increase too much , they will influence the economic situation.


Interesting insights:

If the recover rate is higher, more people will recover from the disease. It seems to be a positive sign. However, it would lead to a higher number of recovered people and more susceptible. As a result, there would be more cases, and would have a negative impact on the economic growth.