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An SIR model for Covid-19

This is a simple example of an SIR model for my Mathematics for Liberal Arts classes at Northern Kentucky University, Spring of 2022.

Let's think about things on the scale of a week. What happens over a week?

With an Ro of 2 (2 people infected for each infected individual, over the course of a week); recovery rate of 1 (every infected person loses their infectiousness after a week), and resusceptible rate of .05 (meaning .05, or a twentieth of the recovered lose their immunity each week), the disease peaks -- does the wave, then waves again before the year is out, then ultimately becomes
"endemic" (that is, it's never going away, which is clear after two years -- that is, a time of 104 weeks). This is like our seasonal flu (only the disease in this simulation doesn't illustrate seasonality -- that requires a more complicated model).

With an Ro of .9, recovery rate of 1, and resusceptible rate of .05, the disease is eliminated.

Masking, social distancing (including quarantining following contact), and quarantines all serve to reduce infectivity. And if we can drive infectivity down far enough, the disease can be eliminated. Other things that help is slowing down the resusceptibility, by vaccinating. Vaccines (in general) impart an immune response that reduces -- or even eliminates -- your susceptibility. We are still learning the extent to which these vaccines impart long-term immunity.

Other tools at our disposal include Covid-19 treatments, which increase the recovery rate, and vaccinations, which reduce the resusceptible rate. These can also serve to help us eradicate a disease, so that it doesn't become endemic (and so plague us forever).

Andy Long
Mathematics and Statistics

Some resources:
  1. Wear a good mask: https://www.cdc.gov/coronavirus/2019-ncov/your-health/effective-masks.html
  2. Gotta catch those sneezes: https://www.dailymail.co.uk/sciencetech/article-8221773/Video-shows-26-foot-trajectory-coronavirus-infected-sneeze.html

MAT115 Covid Simulation
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The Covid-19 pandemic has introduced a variety of novel and intense difficulties, from dealing with the production network for individual defensive gear (PPE) to changing labor force ability to adapting to monetary misfortune. Amidst these difficulties lies a chance for medical services pioneers to more readily position and change their associations for an eventual fate of unusual amazement. To oversee limit, monetary misfortune, and care overhaul, medical services associations have settled on the basic choice to deliver or lessen labor force or to move numerous representatives to far off work, incorporating clinicians working with telehealth advances. (www.catalyst.nejm.org)


Reference:
Begun, J.W. PhD, Jiang, J.H, PhD,. (2020, October 9). NEJM Catalyst/Innovations in Care Delivery. Health Care Management During Covid-19: Insights from Complexity Science. Retrieved from https://catalyst.nejm.org/doi/full/10.1056/CAT.20.0505

Covid-19 Health Care Complexities and Variables
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Simulating virus infecting a body after entering, replicating inside living cells, and the body's immune response towards the virus
VirusModel
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covid 19 in china 1
4 2 days ago
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Here we have a basic SEIR model and we will investigate what changes would be appropriate for modelling the 2019 Coronavirus.

The initial parametrization is based on the suggested current data. The initial population is set for Catalonia.

Clone of COVID-19 spread
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A Susceptible-Infected-Recovered (SIR) disease model with waning immunity

COVID-19 Delta Variant Spread Among Emory Students
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Агентская модель болезни COVID-19 в США
Агентская модель болезни COVID-19 в США
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fatality (death rate)= 2.5%
(as of November in U.S.; source oneworldindata.org)

reinfection rate- unknown, rare
(as of October; source:https://www.ajmc.com/view/first-case-of-covid-19-reinfection-detected-in-the-us)
Covid-19 model 2
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This System Model presents the cases of COVID-19 in Puerto Princesa City as of June 3, 2021

Insight Author: Pia Mae M. Palay
System Dynamic Model of COVID 19 in Puerto Princesa City
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A sample model for class discussion modeling COVID-19 outbreaks and responses from government with the effect on the local economy.  Govt policy is dependent on reported COVID-19 cases, which in turn depend on testing rates less those who recover

Assumptions
The government has reduced both the epidemic and economic development by controlling immigration.




Yuhao c, BMA708_Marketing insights into Big Data.
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A Model for COVID-19 outbreak
AT3
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Агентное моделирование Covid-19
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COVID-19 outbreak model brief description

The model stimulated the COVID-19 outbreak at Burnie in Tasmania. The pandemic spread was driven by infection rate, death rate, recovery rate, and government policy.

The government policy reduces the infection in some way, but it also decreases the physical industry. Online industry plays a vital role during the pandemic and brings more opportunities to the world economy. 

The vaccination directly reduces the infection rate. The national border will open as long as residents have been fully vaccinated. 

Assumption: 
The model was created based on different rates, including infection rate, death rate, testing rate and recovered rate. There will be difference between the real cases and the model. 

The model only list five elements of government policies embracing vaccination rate, national border and state border restrictions, public health orders, and business restrictions. Public health order includes social distance and residents should wear masks in high spread regions. 

This model only consider two industries which are physical industry, like manufacturer, retailers, or hospitality industries, and online industry. During the pandemic, employees star to work from home and students can have online class. Therefore, the model consider the COVID-19 has positive impact on online industry. 

Interesting insights:
The susceptible will decrease dramatically in first two weeks due to high infection rate and low recovery rate and government policy. After that, the number of susceptible will have a slight decline. 

The death toll and recovery rate was increased significantly in the first two weeks due to insufficient healthy response. And the trend will become mild as government policy works. 



BMA708_DafeiMeng_567691_Model of COVID-19 Outbreak in Burnie, Tasmania
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2 самост
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Here we have a basic SEIR model and we will investigate what changes would be appropriate for modelling the 2019 Coronavirus 

ECM-Training - SEIR Infectious Disease Model for COVID-19
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New SEIR COVID-19
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This model calculates and demonstrates the possible spread of COVID-19 through an agent-based map. It shows the timeline of a healthy individual being infected to recovery.
COVID Model
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The Infection / Recovery & Immune / Rate of a Global a Population of 8.2 Billion People.
The Pandemic Management of COVID-19 - Richard A. Estefan
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SD MODEL COVID-19
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SARS-CoV-19 spread in different countries
- please adjust variables accordingly

Italy
  • elderly population (>65): 0.228
  • estimated undetected cases factor: 4-11
  • starting population size: 60 000 000
  • high blood pressure: 0.32 (gbe-bund)
  • heart disease: 0.04 (statista)
  • free intensive care units: 3 100

Germany
  • elderly population (>65): 0.195 (bpb)
  • estimated undetected cases factor: 2-3 (deutschlandfunk)
  • starting population size: 83 000 000
  • high blood pressure: 0.26 (gbe-bund)
  • heart disease: 0.2-0.28 (herzstiftung)
  • free intensive care units: 5 880

France
  • elderly population (>65): 0.183 (statista)
  • estimated undetected cases factor: 3-5
  • starting population size: 67 000 000
  • high blood pressure: 0.3 (fondation-recherche-cardio-vasculaire)
  • heart disease: 0.1-0.2 (oecd)
  • free intensive care units: 3 000

As you wish
  • numbers of encounters/day: 1 = quarantine, 2-3 = practicing social distancing, 4-6 = heavy social life, 7-9 = not caring at all // default 2
  • practicing preventive measures (ie. washing hands regularly, not touching your face etc.): 0.1 (nobody does anything) - 1 (very strictly) // default 0.8
  • government elucidation: 0.1 (very bad) - 1 (highly transparent and educating) // default 0.9
  • Immunity rate (due to lacking data): 0 (you can't get immune) - 1 (once you had it you'll never get it again) // default 0.4

Key
  • Healthy: People are not infected with SARS-CoV-19 but could still get it
  • Infected: People have been infected and developed the disease COVID-19
  • Recovered: People just have recovered from COVID-19 and can't get it again in this stage
  • Dead: People died because of COVID-19
  • Immune: People got immune and can't get the disease again
  • Critical recovery percentage: Chance of survival with no special medical treatment
SARS-CoV-19 model