The three common recurring structures.

This model works in units of genes per year. It is assumed that Transcription, Repair and the Food Queue are all in Gene units in spite of their having different functions. The Repair process repairs Genes per year. The Transcription process transcribes Genes per year and the Exogenous Food source adds Food in Genes needed to process it per year. Transcription proportion is in Genes (10 of them split between transcription and repair). Other variables like Damage and CpG are dimensionless. 

Use a savings account model to investigate the manner in which inflows and outflows govern the quantity of a stock. Extend the structure to create and investigate the relathionships of a growth producing reinforcing loop.

PCN Notes: change structure so that <time> is not needed in equation for interest, and share with Gene.

A basic production model showing negative and positive loops, often called a balancing model.
Thanks
Gene.

From Fig 12.2 p317 Pigliucci M and Muller GB (2010) Evolution: The Extended Synthesis

Causal loop summary of Baha'i 2005 document based on my gemini interaction using Gene Bellinger's AI prompts

​From Fig 1.1 p11  Pigliucci M and Muller GB (2010) Evolution: The Extended Synthesis. This is a shift in emphasis from statistical correlation to mechanistic causation (p12), including the conditions for the origin and innovation of traits (p13). It overcomes the gradualism, externalism and gene centrism of the Modern Synthesis. Non-gradual change is a property of complex dynamical systems. EvoDevo processes generate particular forms of change rather than others.Genes are followers in the evolutionary process that capture the emergent interactions among environment, development and inheritance into genetic-epigenetic circuits, which are passed to and elaborated on in subsequent generations (p14).

Small Intestine example from Progress in Biophysics & Molecular Biology Special Issue 2016 From the century of the genome to the century of the organism: New theoretical approaches paper on organization. Compare with Bogdanov (click tag)

This is a stock-flow consistent model, namely the simplest (SIM) model with government money. I have added imports and exports and an exchange rate which has an influence on consumption demand via real disposable income and real foreign demand.

Godley/Lavoie (2006), chapter 3

(I had to change the equation for consumption demand. The disposable income now enters with a time lag of one period. Otherwise the model would be recursive and would not work in Insight Maker. Thanks to Gene for support.)

This is a stock-flow consistent model, namely a modified version of the simplest (PC) model with money and boonds.

Godley/Lavoie (2006), chapter 4

(I had to change the equation for consumption demand. The disposable income now enters with a time lag of one period. Otherwise the model would be recursive and would not work in Insight Maker. Thanks to Gene for support.)

Level of biological organization linking cell level division and population level evolution

WIP based mostly on Jan Toporowski 2013 vol 1 and 2018 vol 2 books on Michal Kalecki: An Intellectual Biography