System Modeling 5: Gene Regulation Instructions
Causal loop diagram summary based on Richard Southwell's video Category
Theory For Beginners: Open Dynamical Systems and my Gemini interaction Feb2026 using Gene Bellinger's AI prompts
Category Theory on Open Dynamical Systems in Biology
Modeling 5: Gene Regulation
Genética, GSD - Liliana, André, Leonor
WIP Based on Gene's Enabling a Better Tomorrow Map IM-2879 this is a Specific Health Care version based on the archived Systemswiki Health Care material. The focus is on Models and Simulation, with videos and discussion in the fullness of time. I am following Gene's Adventures in Wonderland framework. Revised for More Complex AnyLogic transition at IM-57331
Health Systems and Data Science Course
A tongue in cheek look at taking a Gene Udemy Course
A Never Ending Story
Gene Bellinger's CST course requires several causation models to be developed. This is my first sheet of such models.
Certified Systems Thinker #1
Draft 4 of Computer Model-Ebola
Causal loop diagram illustrating how evolution, in the form of small incremental change (realized through random genetic mutation) paired with natural selection, serves to evolve species.
Additionally, the diagram illustrates the countering effects of genetic drift, which serves to reduce genetic variation by eliminating beneficial genes.
Evolutionary Change (2-Loop)
Tragedy of the Commons Archetype (Cite: Gene Bellinger)
What influences sleep quality?
Homework for systems thinking course by Gene Bellinger
SLEEP
Causal loop diagram of the John Baez 2023 article Compositional
Modeling with Stock-Flow Diagrams describing work with Nate Osgood on System dynamics epidemiology models based on my Gemini interaction using Gene Bellinger's AI prompts
Category theory applied to System Dynamics Model Composition
From Fig 12.2 p317 Pigliucci M and Muller GB (2010) Evolution: The Extended Synthesis
Development dynamic interactions
Small Intestine example from Progress in Biophysics & Molecular Biology Special Issue 2016 From the century of the genome to the century of the organism: New theoretical approaches paper on organization. Compare with Bogdanov (click tag)
Biology Principles of Organization and Variation 1
Existem cerca de quinze arquétipos conhecidos com um interessante conjunto de relações entre eles.
Este modelo foi originalmente concebido por Gene Bellinger.
Traduzido por Ravi Resck
Arquétipos de Sistemas
From Fig 1.1 p11 Pigliucci M and Muller GB (2010) Evolution: The Extended Synthesis. This is a shift in emphasis from statistical correlation to mechanistic causation (p12), including the conditions for the origin and innovation of traits (p13). It overcomes the gradualism, externalism and gene centrism of the Modern Synthesis. Non-gradual change is a property of complex dynamical systems. EvoDevo processes generate particular forms of change rather than others.Genes are followers in the evolutionary process that capture the emergent interactions among environment, development and inheritance into genetic-epigenetic circuits, which are passed to and elaborated on in subsequent generations (p14).
Evolution extended synthesis
