Insight diagram
This model is a classic simulation of the production cycle in the ocean, including the effects of the thermocline in switching off advection of dissolved nutrients and detritus to the surface layer.

It illustrates a number of interesting features including the coupling of three state variables in a closed cycle, the use of time to control the duration of advection, and the modulus function for cycling annual temperature data over multiple years.

The model state variables are expressed in nitrogen units (mg N m-3), and the calibration is based on:

Baliño, B.M. 1996. Eutrophication of the North Sea, 1980-1990: An evaluation of anthropogenic nutrient inputs using a 2D phytoplankton production model. Dr. scient. thesis, University of Bergen.
 
Fransz, H.G. & Verhagen, J.H.G. 1985. Modelling Research on the Production Cycle of Phytoplankton in the Southern Bight of the Northn Sea in Relation to Riverborne Nutrient Loads. Netherlands Journal of Sea Research 19 (3/4): 241-250.

This model was first implemented in PowerSim some years ago by one of my M.Sc. students, who then went on to become a Buddhist monk. Although this is a very Zen model, as far as I'm aware, the two facts are unrelated.
Clone of NPD model (Nutrients, Phytoplankton, Detritus)
Insight diagram
HANDY Model of Societal Collapse from Ecological Economics Paper 
see also D Cunha's model at IM-15085
Clone of Human and Nature Dynamics of Societal Inequality
Insight diagram
A basic model of the short-term carbon cycle.
Short-term Carbon Cycle
Insight diagram
By Austin Wallace, Michelle Tomaszewski, and Ravish Sharma
Synthetic meat disrupting the beef industry - Solution
Insight diagram
This model is a classic simulation of the production cycle in the ocean, including the effects of the thermocline in switching off advection of dissolved nutrients and detritus to the surface layer.

It illustrates a number of interesting features including the coupling of three state variables in a closed cycle, the use of time to control the duration of advection, and the modulus function for cycling annual temperature data over multiple years.

The model state variables are expressed in nitrogen units (mg N m-3), and the calibration is based on:

Baliño, B.M. 1996. Eutrophication of the North Sea, 1980-1990: An evaluation of anthropogenic nutrient inputs using a 2D phytoplankton production model. Dr. scient. thesis, University of Bergen.
 
Fransz, H.G. & Verhagen, J.H.G. 1985. Modelling Research on the Production Cycle of Phytoplankton in the Southern Bight of the Northn Sea in Relation to Riverborne Nutrient Loads. Netherlands Journal of Sea Research 19 (3/4): 241-250.

This model was first implemented in PowerSim some years ago by one of my M.Sc. students, who then went on to become a Buddhist monk. Although this is a very Zen model, as far as I'm aware, the two facts are unrelated.
Clone of NPD model (Nutrients, Phytoplankton, Detritus)
Insight diagram
A draft model of the techonomy
Technology Ecosystem
Insight diagram
This model is a modified version of the 'Very Simple Ecosystem Model' (VSEM; Hartig et al. 2019). Controls have been added to gross primary productivity (GPP) and heterotrophic respiration (Rhetero) based on evapotranspiration rates.

Reference:
Hartig, F., Minunno, F., and Paul, S. (2019). BayesianTools: General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics. R package version 0.1.7. https://CRAN.R-project.org/package=BayesianTools
Clone of Very Simple Ecosystem Model with Evapotranspiration (VSEM-ET)
Insight diagram
This model implements the one-dimensional version of the advection-dispersion equation for an estuary. The equation is:

dS/dt = (1/A)d(QS)/dx - (1/A)d(EA)/dx(dS/dx) (Eq. 1)

Where S: salinity (or any other constituent such as chlorophyll or dissolved oxygen), (e.g. kg m-3); t: time (s); A: cross-sectional area (m2); Q: river flow (m3 s-1); x: length of box (m); E: dispersion coefficient (m2 s-1).

For a given length delta x, Adx = V, the box volume. For a set value of Q, the equation becomes:

VdS/dt = QdS - (d(EA)/dx) dS (Eq. 2)

EA/x, i.e. (m2 X m2) / (m s) = E(b), the bulk dispersion coefficient, units in m3 s-1, i.e. a flow, equivalent to Q

At steady state, dS/dt = 0, therefore we can rewrite Eq. 2 for one estuarine box as:

Q(Sr-Se)=E(b)r,e(Sr-Se)-E(b)e,s(Se-Ss) (Eq. 3)

Where Sr: river salinity (=0), Se: mean estuary salinity; Ss: mean ocean salinity

E(b)r,e: dispersion coefficient between river and estuary, and E(b)e,s: dispersion coefficient between the estuary and ocean.

By definition the value of E(b)r,e is zero, otherwise we are not at the head (upstream limit of salt intrusion) of the estuary. Likewise Sr is zero, otherwise we're not in the river. Therefore:

QSe=E(b)e,s(Se-Ss) (Eq. 4)

At steady state

E(b)e,s = QSe/(Se-Ss) (Eq 5)

The longitudinal dispersion simulates the turbulent mixiing of water in the estuary during flood and ebb, which supplies salt water to the estuary on the flood tide, and make the sea a little more brackish on the ebb.

You can use the slider to turn off dispersion (set to zero), and see that if the tidal wave did not mix with the estuary water due to turbulence, the estuary would quickly become a freshwater system.
Clone of Estuarine salinity 1D model
Insight diagram
This model implements the one-dimensional version of the advection-dispersion equation for an estuary. The equation is:

dS/dt = (1/A)d(QS)/dx - (1/A)d(EA)/dx(dS/dx) (Eq. 1)

Where S: salinity (or any other constituent such as chlorophyll or dissolved oxygen), (e.g. kg m-3); t: time (s); A: cross-sectional area (m2); Q: river flow (m3 s-1); x: length of box (m); E: dispersion coefficient (m2 s-1).

For a given length delta x, Adx = V, the box volume. For a set value of Q, the equation becomes:

VdS/dt = QdS - (d(EA)/dx) dS (Eq. 2)

EA/x, i.e. (m2 X m2) / (m s) = E(b), the bulk dispersion coefficient, units in m3 s-1, i.e. a flow, equivalent to Q

At steady state, dS/dt = 0, therefore we can rewrite Eq. 2 for one estuarine box as:

Q(Sr-Se)=E(b)r,e(Sr-Se)-E(b)e,s(Se-Ss) (Eq. 3)

Where Sr: river salinity (=0), Se: mean estuary salinity; Ss: mean ocean salinity

E(b)r,e: dispersion coefficient between river and estuary, and E(b)e,s: dispersion coefficient between the estuary and ocean.

By definition the value of E(b)r,e is zero, otherwise we are not at the head (upstream limit of salt intrusion) of the estuary. Likewise Sr is zero, otherwise we're not in the river. Therefore:

QSe=E(b)e,s(Se-Ss) (Eq. 4)

At steady state

E(b)e,s = QSe/(Se-Ss) (Eq 5)

The longitudinal dispersion simulates the turbulent mixiing of water in the estuary during flood and ebb, which supplies salt water to the estuary on the flood tide, and make the sea a little more brackish on the ebb.

You can use the slider to turn off dispersion (set to zero), and see that if the tidal wave did not mix with the estuary water due to turbulence, the estuary would quickly become a freshwater system.
Clone of Clone of Estuarine salinity 1 box model (J. Gomes Ferreira)
Insight diagram
This model demonstrates the various activities occurring across South East Queensland can both negatively and positively impact our endangered Koala population.
Impacts on Koala populations in South East Queensland
Insight diagram
It seems that I've made a mess of mine! But it's a mess with a purpose....

This model illustrates predator prey interactions using real-life data of wolf and moose populations on the Isle Royale.

Experiment with adjusting the initial number of moose and wolves on the island.
Mat375: Isle Royale: Predator Prey Interactions
Insight diagram
OVERSHOOT GROWTH GOES INTO TURBULENT CHAOTIC DESTRUCTION

The existing global capitalistic growth paradigm is totally flawed

The chaotic turbulence is the result of the concept of infinite bigness this has been the destructive influence on all empires and now shown up by Feigenbaum numbers and Dunbar numbers for neural netwoirks

See Guy Lakeman Bubble Theory for more details on keeping systems within finite limited size working capacity containers (villages communities)

Clone of OVERSHOOT GROWTH INTO TURBULENCE
Insight diagram
This model is a classic simulation of the production cycle in the ocean, including the effects of the thermocline in switching off advection of dissolved nutrients and detritus to the surface layer.

It illustrates a number of interesting features including the coupling of three state variables in a closed cycle, the use of time to control the duration of advection, and the modulus function for cycling annual temperature data over multiple years.

The model state variables are expressed in nitrogen units (mg N m-3), and the calibration is based on:

Baliño, B.M. 1996. Eutrophication of the North Sea, 1980-1990: An evaluation of anthropogenic nutrient inputs using a 2D phytoplankton production model. Dr. scient. thesis, University of Bergen.
 
Fransz, H.G. & Verhagen, J.H.G. 1985. Modelling Research on the Production Cycle of Phytoplankton in the Southern Bight of the Northn Sea in Relation to Riverborne Nutrient Loads. Netherlands Journal of Sea Research 19 (3/4): 241-250.

This model was first implemented in PowerSim some years ago by one of my M.Sc. students, who then went on to become a Buddhist monk. Although this is a very Zen model, as far as I'm aware, the two facts are unrelated.
Clone of NPD model (Nutrients, Phytoplankton, Detritus)
Insight diagram
Simple mass balance model for lakes, based on the Vollenweider equation:

dMw/dt = Min - sMw - Mout

The model was first used in the 1960s to determine the phosphorus concentration in lakes and reservoirs, for eutrophication assessment.
Clone of Clone of Vollenweider model
Insight diagram
Combining electromobility and renewable energies since 2014.

http://www.amsterdamvehicle2grid.nl/

Clone of Amsterdam V2G simulation 2.0
Insight diagram
From Schluter et al 2017 article A framework for mapping and comparing behavioural theories in models of social-ecological systems COMSeS2017 video. See also Balke and Gilbert 2014 JASSS article How do agents make decisions? (recommended by Kurt Kreuger U of S)
Clone of Modelling human behaviour (MoHuB)
Insight diagram
The model starts in 1900. In the year 2000 you get the chance to set a new emission target and nominal time to reach it. Your aim is to have atmospheric CO2 stabilise at about 400 ppmv in 2100.  From Sterman, John D. (2008)  Risk Communication on Climate:  Mental Models and Mass Balance.  Science 322 (24 October): 532-533. Clone of IM-694 to run 1900 to 2100.
Clone of Climate Stabilization Task
Insight diagram
This model simulates the growth of carp in an aquaculture pond, both with respect to production and environmental effects.

Both the anabolism and fasting catabolism functions contain elements of allometry, through the m and n exponents that reduce the ration per unit body weight as the animal grows bigger.

The 'S' term provides a growth adjustment with respect to the number of fish, so implicitly adds competition (for food, oxygen, space, etc).

 Carp are mainly cultivated in Asia and Europe, and contribute to the world food supply.

Aquaculture currently produces sixty million tonnes of fish and shellfish every year. In May 2013, aquaculture production overtook wild fisheries for human consumption.

This paradigm shift last occurred in the Neolithic period, ten thousand years ago, when agriculture displaced hunter-gatherers as a source of human food.

Aquaculture is here to stay, and wild fish capture (fishing) will never again exceed cultivation.

Recreational fishing will remain a human activity, just as hunting still is, after ten thousand years - but it won't be a major source of food from the seas.

The best way to preserve wild fish is not to fish them.
Clone of CARP - Carp AquacultuRe in Ponds
Insight diagram
This model simulates the growth of carp in an aquaculture pond, both with respect to production and environmental effects.

Both the anabolism and fasting catabolism functions contain elements of allometry, through the m and n exponents that reduce the ration per unit body weight as the animal grows bigger.

The 'S' term provides a growth adjustment with respect to the number of fish, so implicitly adds competition (for food, oxygen, space, etc).

 Carp are mainly cultivated in Asia and Europe, and contribute to the world food supply.

Aquaculture currently produces sixty million tonnes of fish and shellfish every year. In May 2013, aquaculture production overtook wild fisheries for human consumption.

This paradigm shift last occurred in the Neolithic period, ten thousand years ago, when agriculture displaced hunter-gatherers as a source of human food.

Aquaculture is here to stay, and wild fish capture (fishing) will never again exceed cultivation.

Recreational fishing will remain a human activity, just as hunting still is, after ten thousand years - but it won't be a major source of food from the seas.

The best way to preserve wild fish is not to fish them.
Clone of CARP - Carp AquacultuRe in Ponds
Insight diagram
Testing for MSc
Clone 26/07/16 of Plastic Pollution Solution Revolution
Insight diagram
Simple model to illustrate an annual cycle for phytoplankton biomass in temperate waters.
Potential primary production uses Steele's equation and a Michaelis-Menten (or Monod) function for nutrient limitation. Respiratory losses are only a function of biomass.
Clone of Phytoplankton model URI
Insight diagram
This model is a classic simulation of the production cycle in the ocean, including the effects of the thermocline in switching off advection of dissolved nutrients and detritus to the surface layer.

It illustrates a number of interesting features including the coupling of three state variables in a closed cycle, the use of time to control the duration of advection, and the modulus function for cycling annual temperature data over multiple years.

The model state variables are expressed in nitrogen units (mg N m-3), and the calibration is based on:

Baliño, B.M. 1996. Eutrophication of the North Sea, 1980-1990: An evaluation of anthropogenic nutrient inputs using a 2D phytoplankton production model. Dr. scient. thesis, University of Bergen.
 
Fransz, H.G. & Verhagen, J.H.G. 1985. Modelling Research on the Production Cycle of Phytoplankton in the Southern Bight of the Northn Sea in Relation to Riverborne Nutrient Loads. Netherlands Journal of Sea Research 19 (3/4): 241-250.

This model was first implemented in PowerSim some years ago by one of my M.Sc. students, who then went on to become a Buddhist monk. Although this is a very Zen model, as far as I'm aware, the two facts are unrelated.
Clone of NPD model (Nutrients, Phytoplankton, Detritus)
Insight diagram
Clone of Assignment 2_Shahrukh Kamran_HNEE
Insight diagram
Here is my systems flow chart for a moose population!
Moose System Flow Chart