SIR | Insight Maker

A spatially aware, agent based model of disease spread. There are three classes of people: susceptible (healthy), infected (sick and infectious), and recovered (healthy and temporarily immune).

@LinkedIn, Twitter, YouTube

Clone of Spatially Aware SIR Disease Model

Yan Barbosa

This is a first example of a simple SIR (Susceptible, Infected, Recovered) model.

There are three pools of individuals: those who are infected (without them, no disease!), the pool of those who are at risk (susceptible), and the recovered -- who may lose their immunity and become susceptible again.

A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel.nb

LabSIR Key of A Simple SIR (Susceptible, Infected, Recovered) Example

Andrew E Long

This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

Clone of Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example

Jiangkun Wang

https://www.sciencedirect.com/science/article/pii/S0960077920309851

2 strain SIR model

Jeff Denny

Clone of SIR Model

Nicolas Fuentes

This is the third in a series of models that explore the dynamics of infectious diseases. This model looks at the impact of two types of suppression policies.

Press the simulate button to run the model with no policy. Then explore what happens when you set up a lockdown and quarantining policy by changing the settings below. First explore changing the start date with a policy duration of 60 days.

Clone of SIRD Epidemic Model with Suppression Policies

shaun savage

11 months ago

Modelo SIR seguindo tutorial

SIR - tutorial

BÁRBARA DE MELO QUINTELA

A spatially aware, agent based model of disease spread. There are three classes of people: susceptible (healthy), infected (sick and infectious), and recovered (healthy and temporarily immune).

@LinkedIn, Twitter, YouTube

Clone of Spatially Aware SIR Disease Model

Aigerim Seitbattal

7 months ago

Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured in

https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:

Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death

Cameron Demler

Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured in

https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:

Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death

Dias Kasymbekov

8 months ago

This is a first example of a simple SIR (Susceptible, Infected, Recovered) model.

There are three pools of individuals: those who are infected (without them, no disease!), the pool of those who are at risk (susceptible), and the recovered -- who may lose their immunity and become susceptible again.

A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel.nb

Clone of A Simple SIR (Susceptible, Infected, Recovered) Example

Thomas Hedlund Leijon

Perkembangan Kasus PMK (Penyakit Mulut dan Kuku) pada Hewan Ternak di Pulau Lombok, Nusa Tenggara Barat

SEPTIAN EKA RAHMADI

8 months ago

Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured in

https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:

Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death

Mitch Daniels

10 months ago

Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured in

https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:

Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death

Jon Ford

This is the first in a series of models that explore the dynamics of and policy impacts on infectious diseases. This basic model divides the population into three categories -- Susceptible (S), Infectious (I) and Recovered (R).

Press the simulate button to run the model and see what happens at different values of the Reproduction Number (R0).

The second model that includes a simple test and isolate policy can be found here.

Clone of Future Learn Basic SIR Model

kmolenda

This is a first example of a simple SIR (Susceptible, Infected, Recovered) model.

There are three pools of individuals: those who are infected (without them, no disease!), the pool of those who are at risk (susceptible), and the recovered -- who may lose their immunity and become susceptible again.

A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel.nb

Clone of A Simple SIR (Susceptible, Infected, Recovered) Example

Wang Hongjun

Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured in

https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:

Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death

Liv Hammarström

8 months ago

This is the third in a series of models that explore the dynamics of infectious diseases. This model looks at the impact of two types of suppression policies.

Press the simulate button to run the model with no policy. Then explore what happens when you set up a lockdown and quarantining policy by changing the settings below. First explore changing the start date with a policy duration of 60 days.

Clone of SIRD Epidemic Model with Suppression Policies

kmolenda

Thanks to
https://insightmaker.com/insight/25229/SIR-model-with-stochastic-events
for this example of adding stochasticity to the SIR model. "A simple extension of the tutorial SIR example, adding in Poisson events for infection and recovery. There is one macro, RandPoissonStep(rate)... to simulate Poisson processes."

I've tried to add in the infection step, as well as turn numbers into integers (without much luck). But it certainly has some interesting dynamics! I've also added in a phase plane graphic.

Clone of SIR model with stochastic events

Kyra Evers

3 months ago

A spatially aware, agent based model of disease spread. There are three classes of people: susceptible (healthy), infected (sick and infectious), and recovered (healthy and temporarily immune).

@LinkedIn, Twitter, YouTube

Clone of Spatially Aware SIR Disease Model

Aigerim Seitbattal

7 months ago

This is the second in a series of models that explore the dynamics of and policy impacts on infectious diseases. This basic SIR model explores the impact of a simple test and isolate policy. The first model can be found here.

Clone of Future Learn Basic SIR Model with Sample Testing

kmolenda

This is the third in a series of models that explore the dynamics of infectious diseases. This model looks at the impact of two types of suppression policies.

Press the simulate button to run the model with no policy. Then explore what happens when you set up a lockdown and quarantining policy by changing the settings below. First explore changing the start date with a policy duration of 60 days.

Clone of SIRD Epidemic Model with Suppression Policies

kmolenda

A spatially aware, agent based model of disease spread. There are three classes of people: susceptible (healthy), infected (sick and infectious), and recovered (healthy and temporarily immune).

@LinkedIn, Twitter, YouTube

Clone of Spatially Aware SIR Disease Model

Lea Nehme

Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured in

https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:

Clone of Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death

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