Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.
With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.
We start with an SIR model, such as that featured in the MAA model featured in
https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model
Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure
With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.
Resources:
- http://www.nku.edu/~longa/classes/2020spring/mat375/mathematica/SIRModel-MAA.nb
- https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model
Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death
Modelo epidemiológico simples
SIR: Susceptíveis - Infectados - Recuperados
Dados iniciais do Brasil em 04 Abr 2020
Fonte:
https://www.worldometers.info/coronavirus/country/brazil/
Clone of Modelo SIR simples - Covid-19
This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.
They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb
Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example
This is the third in a series of models that explore the dynamics of infectious diseases. This model looks at the impact of two types of suppression policies.
Press the simulate button to run the model with no policy. Then explore what happens when you set up a lockdown and quarantining policy by changing the settings below. First explore changing the start date with a policy duration of 60 days.
Clone of SIRD Epidemic Model with Suppression Policies
Thanks to
https://insightmaker.com/insight/25229/SIR-model-with-stochastic-events
for this example of adding stochasticity to the SIR model. "A simple extension of the tutorial SIR example, adding in Poisson events for infection and recovery. There is one macro, RandPoissonStep(rate)... to simulate Poisson processes."
I've tried to add in the infection step, as well as turn numbers into integers (without much luck). But it certainly has some interesting dynamics! I've also added in a phase plane graphic.
Clone of SIR model with stochastic events
This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.
They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb
Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example
This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.
They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb
Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example
This is a first example of a simple SIR (Susceptible, Infected, Recovered) model.
There are three pools of individuals: those who are infected (without them, no disease!), the pool of those who are at risk (susceptible), and the recovered -- who may lose their immunity and become susceptible again.
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel.nb
Clone of A Simple SIR (Susceptible, Infected, Recovered) Example
This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.
They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb
Clone of Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example
This is the third in a series of models that explore the dynamics of infectious diseases. This model looks at the impact of two types of suppression policies.
Press the simulate button to run the model with no policy. Then explore what happens when you set up a lockdown and quarantining policy by changing the settings below. First explore changing the start date with a policy duration of 60 days.
Clone of SIRD Epidemic Model with Suppression Policies
This is a first example of a simple SIR (Susceptible, Infected, Recovered) model.
There are three pools of individuals: those who are infected (without them, no disease!), the pool of those who are at risk (susceptible), and the recovered -- who may lose their immunity and become susceptible again.
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel.nb
Clone of A Simple SIR (Susceptible, Infected, Recovered) Example
This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.
They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb
Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example
This is a first example of a simple SIR (Susceptible, Infected, Recovered) model.
There are three pools of individuals: those who are infected (without them, no disease!), the pool of those who are at risk (susceptible), and the recovered -- who may lose their immunity and become susceptible again.
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel.nb
Clone of A Simple SIR (Susceptible, Infected, Recovered) Example
This is a first example of a simple SIR (Susceptible, Infected, Recovered) model.
There are three pools of individuals: those who are infected (without them, no disease!), the pool of those who are at risk (susceptible), and the recovered -- who may lose their immunity and become susceptible again.
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel.nb
Clone of A Simple SIR (Susceptible, Infected, Recovered) Example
This is the first in a series of models that explore the dynamics of and policy impacts on infectious diseases. This basic model divides the population into three categories -- Susceptible (S), Infectious (I) and Recovered (R).
Press the simulate button to run the model and see what happens at different values of the Reproduction Number (R0).
The second model that includes a simple test and isolate policy can be found here.
Clone of Future Learn Basic SIR Model
This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.
They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb
Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example
This is a first example of a simple SIR (Susceptible, Infected, Recovered) model.
There are three pools of individuals: those who are infected (without them, no disease!), the pool of those who are at risk (susceptible), and the recovered -- who may lose their immunity and become susceptible again.
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel.nb
LabSIR Key of A Simple SIR (Susceptible, Infected, Recovered) Example
This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.
They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb
Clone of Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example
This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.
They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb
Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example
This is a first example of a simple SIR (Susceptible, Infected, Recovered) model.
There are three pools of individuals: those who are infected (without them, no disease!), the pool of those who are at risk (susceptible), and the recovered -- who may lose their immunity and become susceptible again.
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel.nb
Clone of A Simple SIR (Susceptible, Infected, Recovered) Example
This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.
They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb
Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example
This is a first example of a simple SIR (Susceptible, Infected, Recovered) model.
There are three pools of individuals: those who are infected (without them, no disease!), the pool of those who are at risk (susceptible), and the recovered -- who may lose their immunity and become susceptible again.
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel.nb
Clone of A Simple SIR (Susceptible, Infected, Recovered) Example
This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.
They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb
Clone of Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example
Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.
With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.
We start with an SIR model, such as that featured in the MAA model featured in
https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model
Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure
With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.
Resources:
- http://www.nku.edu/~longa/classes/2020spring/mat375/mathematica/SIRModel-MAA.nb
- https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model
Clone of Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death
