Primitives for Watershed modeling project. Click Clone Insight at the top right to make a copy that you can edit.  The converter in this file contains precipitation for Phoenix only.
Primitives for Watershed modeling project. Click Clone Insight at the top right to make a copy that you can edit.

The converter in this file contains precipitation for Phoenix only.
Clone of:  'Sucesion Forestal' (by Denny S. Fernandez del Viso) for subtropical forest, which in turn is a modification of 'Modeling forest succession in a northeast deciduous forest' (by Owen Stuart).   Translated to English (by Lisa Belyea)
Clone of: 
'Sucesion Forestal' (by Denny S. Fernandez del Viso) for subtropical forest, which in turn is a modification of 'Modeling forest succession in a northeast deciduous forest' (by Owen Stuart).
Translated to English (by Lisa Belyea)
5 months ago
 Work Cited   E., Kaplan. "Biomes of the World: Tundra." Alpine Biome. Hong Kong: Marshall Cavendish Corporation., n.d. Web. 23 May 2017.      http://www.blueplanetbiomes.org/tundra.htm
Work Cited


E., Kaplan. "Biomes of the World: Tundra." Alpine Biome. Hong Kong: Marshall Cavendish Corporation., n.d. Web. 23 May 2017.     http://www.blueplanetbiomes.org/tundra.htm
 This model is a modified version of the 'Very Simple Ecosystem Model' (VSEM; Hartig et al. 2019). Controls have been added to gross primary productivity (GPP) and heterotrophic respiration (Rhetero) based on evapotranspiration rates.    Reference:  Hartig, F., Minunno, F., and Paul, S. (2019). Baye
This model is a modified version of the 'Very Simple Ecosystem Model' (VSEM; Hartig et al. 2019). Controls have been added to gross primary productivity (GPP) and heterotrophic respiration (Rhetero) based on evapotranspiration rates.

Reference:
Hartig, F., Minunno, F., and Paul, S. (2019). BayesianTools: General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics. R package version 0.1.7. https://CRAN.R-project.org/package=BayesianTools
Fertilizer inflow can cause lake eutrophication. In this simulation, we are studying what happens in a simple lake ecosystem.
Fertilizer inflow can cause lake eutrophication. In this simulation, we are studying what happens in a simple lake ecosystem.
This model is an attempt to simulate what is commonly
referred to as the “pesticide treadmill” in agriculture and how it played out
in the cotton industry in Central America after the Second World War until
around the 1990s.  

 The cotton industry expanded dramatically in Central America
after WW2,
This model is an attempt to simulate what is commonly referred to as the “pesticide treadmill” in agriculture and how it played out in the cotton industry in Central America after the Second World War until around the 1990s.

The cotton industry expanded dramatically in Central America after WW2, increasing from 20,000 hectares to 463,000 in the late 1970s. This expansion was accompanied by a huge increase in industrial pesticide application which would eventually become the downfall of the industry.

The primary pest for cotton production, bol weevil, became increasingly resistant to chemical pesticides as they were applied each year. The application of pesticides also caused new pests to appear, such as leafworms, cotton aphids and whitefly, which in turn further fuelled increased application of pesticides.

The treadmill resulted in massive increases in pesticide applications: in the early years they were only applied a few times per season, but this application rose to up to 40 applications per season by the 1970s; accounting for over 50% of the costs of production in some regions.

The skyrocketing costs associated with increasing pesticide use were one of the key factors that led to the dramatic decline of the cotton industry in Central America: decreasing from its peak in the 1970s to less than 100,000 hectares in the 1990s. “In its wake, economic ruin and environmental devastation were left” as once thriving towns became ghost towns, and once fertile soils were wasted, eroded and abandoned (Lappe, 1998).

Sources: Douglas L. Murray (1994), Cultivating Crisis: The Human Cost of Pesticides in Latin America, pp35-41; Francis Moore Lappe et al (1998), World Hunger: 12 Myths, 2nd Edition, pp54-55.

 The L ogistic Map  is a polynomial mapping (equivalently,  recurrence relation ) of  degree 2 , often cited as an archetypal example of how complex,  chaotic  behaviour can arise from very simple  non-linear  dynamical equations. The map was popularized in a seminal 1976 paper by the biologist  Rob

The Logistic Map is a polynomial mapping (equivalently, recurrence relation) of degree 2, often cited as an archetypal example of how complex, chaotic behaviour can arise from very simple non-linear dynamical equations. The map was popularized in a seminal 1976 paper by the biologist Robert May, in part as a discrete-time demographic model analogous to the logistic equation first created by Pierre François Verhulst

Mathematically, the logistic map is written

where:

 is a number between zero and one, and represents the ratio of existing population to the maximum possible population at year n, and hence x0 represents the initial ratio of population to max. population (at year 0)r is a positive number, and represents a combined rate for reproduction and starvation.
For approximate Continuous Behavior set 'R Base' to a small number like 0.125To generate a bifurcation diagram, set 'r base' to 2 and 'r ramp' to 1
To demonstrate sensitivity to initial conditions, try two runs with 'r base' set to 3 and 'Initial X' of 0.5 and 0.501, then look at first ~20 time steps

This model uses simple functions (converters, cosine) to simulate the water balance inside a reservoir.
This model uses simple functions (converters, cosine) to simulate the water balance inside a reservoir.
Simple model to illustrate Steele's equation for primary production of phytoplankton.  The equation is:  Ppot = Pmax I/Iopt exp(1-I/Iopt)  Where:  Ppot: Potential production (e.g. d-1, or mg C m-2 d-1) Pmax: Maximum production (same units as Ppot) I: Light energy at depth of interest (e.g. uE m-2 s-
Simple model to illustrate Steele's equation for primary production of phytoplankton.

The equation is:

Ppot = Pmax I/Iopt exp(1-I/Iopt)

Where:

Ppot: Potential production (e.g. d-1, or mg C m-2 d-1)
Pmax: Maximum production (same units as Ppot)
I: Light energy at depth of interest (e.g. uE m-2 s-1)
Iopt: Light energy at which Pmax occurs (same units as I)

The model contains no state variables, just illustrates the rate of production, by making the value of I equal to the timestep (in days). Move the slider to the left for more pronounced photoinhibition, to the right for photosaturation.
 This model describes the key processes that influence the water level within Lake Okeechobee.
This model describes the key processes that influence the water level within Lake Okeechobee.
	This a simple and "totally accurate" model of the exponential human population.
This a simple and "totally accurate" model of the exponential human population.
 A simulation illustrating simple predator prey dynamics. You have two populations.

A simulation illustrating simple predator prey dynamics. You have two populations.

A model of water flow within the potable water supply chain
A model of water flow within the potable water supply chain
This model implements a very simple shellfish carrying capacity simulation for tidal creeks with freshwater input.  Physics  The model implements the one-dimensional version of the advection-dispersion equation for an estuary. The equation is:  dS/dt = (1/A)d(QS)/dx - (1/A)d(EA)/dx(dS/dx) (Eq. 1)  W
This model implements a very simple shellfish carrying capacity simulation for tidal creeks with freshwater input.

Physics

The model implements the one-dimensional version of the advection-dispersion equation for an estuary. The equation is:

dS/dt = (1/A)d(QS)/dx - (1/A)d(EA)/dx(dS/dx) (Eq. 1)

Where S: salinity (or any other constituent such as chlorophyll or dissolved oxygen), (e.g. kg m-3); t: time (s); A: cross-sectional area (m2); Q: river flow (m3 s-1); x: length of box (m); E: dispersion coefficient (m2 s-1).

For a given length delta x, Adx = V, the box volume. For a set value of Q, the equation becomes:

VdS/dt = QdS - (d(EA)/dx) dS (Eq. 2)

EA/x, i.e. (m2 X m2) / (m s) = E(b), the bulk dispersion coefficient, units in m3 s-1, i.e. a flow, equivalent to Q

At steady state, dS/dt = 0, therefore we can rewrite Eq. 2 for one estuarine box as:

Q(Sr-Se)=E(b)r,e(Sr-Se)-E(b)e,s(Se-Ss) (Eq. 3)

Where Sr: river salinity (=0), Se: mean estuary salinity; Ss: mean ocean salinity

E(b)r,e: dispersion coefficient between river and estuary, and E(b)e,s: dispersion coefficient between the estuary and ocean.

By definition the value of E(b)r,e is zero, otherwise we are not at the head (upstream limit of salt intrusion) of the estuary. Likewise Sr is zero, otherwise we're not in the river. Therefore:

QSe=E(b)e,s(Se-Ss) (Eq. 4)

At steady state

E(b)e,s = QSe/(Se-Ss) (Eq 5)

The longitudinal dispersion simulates the turbulent mixiing of water in the estuary during flood and ebb, which supplies salt water to the estuary on the flood tide, and make the sea a little more brackish on the ebb.

You can use the top slider to turn off dispersion (set to zero). If the variable being simulated is (a) salinity, you will see that if the tidal wave did not mix with the estuary water due to turbulence, the estuary would quickly become a freshwater system; (b) POM, then the ocean (which typically has less POM) will not contribute a flushing effect and the concentration of POM in the tidal creek or estuary will be higher.

The second slider allows you to simulate a variable river flow, and understand how dispersion compensates for changes in freshwater input.

Biology

Two biological functions are implemented in CREEK, both extremely simplified.

1. Primary production - a constant primary production rate is considered in gC m-3 d-1

2. Oyster filtration - a constant clearance rate (CR) is considered in L ind- 1 h-1, scaled to a certain stocking density S (ind m-3)

Units are normalized, and food depletion is CR * S * POM, in g POM m-3 d-1

The third slider allows for adjustment of different aquaculture densities.

Wild filter-feeding species are included in the model, using an identical clearance rate to the cultivated oysters. Wild species can be turned on or off in the model using the fourth slider.

The model provides three outputs:
1. POM concentration in mg L-1
2. Equivalent in chlorophyll (ug L-1)
3. Total oyster biomass in kg for the whole system
This model illustrates predator prey interactions using real-life data of bison and wolf populations at Yellowstone National Park.
This model illustrates predator prey interactions using real-life data of bison and wolf populations at Yellowstone National Park.


Clone of Pesticide Use in Central America for Lab work        This model is an attempt to simulate what is commonly referred to as the “pesticide treadmill” in agriculture and how it played out in the cotton industry in Central America after the Second World War until around the 1990s.     The cotto
Clone of Pesticide Use in Central America for Lab work


This model is an attempt to simulate what is commonly referred to as the “pesticide treadmill” in agriculture and how it played out in the cotton industry in Central America after the Second World War until around the 1990s.

The cotton industry expanded dramatically in Central America after WW2, increasing from 20,000 hectares to 463,000 in the late 1970s. This expansion was accompanied by a huge increase in industrial pesticide application which would eventually become the downfall of the industry.

The primary pest for cotton production, bol weevil, became increasingly resistant to chemical pesticides as they were applied each year. The application of pesticides also caused new pests to appear, such as leafworms, cotton aphids and whitefly, which in turn further fuelled increased application of pesticides. 

The treadmill resulted in massive increases in pesticide applications: in the early years they were only applied a few times per season, but this application rose to up to 40 applications per season by the 1970s; accounting for over 50% of the costs of production in some regions. 

The skyrocketing costs associated with increasing pesticide use were one of the key factors that led to the dramatic decline of the cotton industry in Central America: decreasing from its peak in the 1970s to less than 100,000 hectares in the 1990s. “In its wake, economic ruin and environmental devastation were left” as once thriving towns became ghost towns, and once fertile soils were wasted, eroded and abandoned (Lappe, 1998). 

Sources: Douglas L. Murray (1994), Cultivating Crisis: The Human Cost of Pesticides in Latin America, pp35-41; Francis Moore Lappe et al (1998), World Hunger: 12 Myths, 2nd Edition, pp54-55.

The simulation integrates or sums (INTEG) the Nj population, with a change of Delta N in each generation, starting with an initial value of 5. The equation for DeltaN is a version of  Nj+1 = Nj  + mu (1- Nj / Nmax ) Nj  the maximum population is set to be one million, and the growth rate constant mu
The simulation integrates or sums (INTEG) the Nj population, with a change of Delta N in each generation, starting with an initial value of 5.
The equation for DeltaN is a version of 
Nj+1 = Nj  + mu (1- Nj / Nmax ) Nj
the maximum population is set to be one million, and the growth rate constant mu = 3.
 
Nj: is the “number of items” in our current generation.

Delta Nj: is the “change in number of items” as we go from the present generation into the next generation. This is just the number of items born minus the number of items who have died.

mu: is the growth or birth rate parameter, similar to that in the exponential growth and decay model. However, as we extend our model it will no longer be the actual growth rate, but rather just a constant that tends to control the actual growth rate without being directly proportional to it.

F(Nj) = mu(1‐Nj/Nmax): is our model for the effective “growth rate”, a rate that decreases as the number of items approaches the maximum allowed by external factors such as food supply, disease or predation. (You can think of mu as the growth or birth rate in the absence of population pressure from other items.) We write this rate as F(Nj), which is a mathematical way of saying F is affected by the number of items, i.e., “F is a function of Nj”. It combines both growth and all the various environmental constraints on growth into a single function. This is a good approach to modeling; start with something that works (exponential growth) and then modify it incrementally, while still incorporating the working model.

Nj+1 = Nj + Delta Nj : This is a mathematical way to say, “The new number of items equals the old number of items plus the change in number of items”.

Nj/Nmax: is what fraction a population has reached of the maximum "carrying capacity" allowed by the external environment. We use this fraction to change the overall growth rate of the population. In the real world, as well as in our model, it is possible for a population to be greater than the maximum population (which is usually an average of many years), at least for a short period of time. This means that we can expect fluctuations in which Nj/Nmax is greater than 1.

This equation is a form of what is known as the logistic map or equation. It is a map because it "maps'' the population in one year into the population of the next year. It is "logistic'' in the military sense of supplying a population with its needs. It a nonlinear equation because it contains a term proportional to Nj^2 and not just Nj. The logistic map equation is also an example of discrete mathematics. It is discrete because the time variable j assumes just integer values, and consequently the variables Nj+1 and Nj do not change continuously into each other, as would a function N(t). In addition to the variables Nj and j, the equation also contains the two parameters mu, the growth rate, and Nmax, the maximum population. You can think of these as "constants'' whose values are determined from external sources and remain fixed as one year of items gets mapped into the next year. However, as part of viewing the computer as a laboratory in which to experiment, and as part of the scientific process, you should vary the parameters in order to explore how the model reacts to changes in them.