#### Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example

##### Maria McMahon

This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

- 3 years 3 months ago

#### Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example

##### Allison Zembrodt

This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

- 3 years 3 months ago

#### Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example

##### Lizzy Compton

This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

- 3 years 3 months ago

#### Clone of Isle Royale: Predator/Prey Model for Moose and Wolves

##### Connor Edwards

This model illustrates predator prey interactions using real-life data of wolf and moose populations on the Isle Royale. It was "cloned" from a model that InsightMaker provides to its users, at

https://insightmaker.com/insight/2068/Isle-Royale-Predator-Prey-Interactions

Thanks Scott Fortmann-Roe.

I've created a Mathematica file that replicates the model, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker.nb

It allows one to experiment with adjusting the initial number of moose and wolves on the island.

I used steepest descent in Mathematica to optimize the parameters, with my objective data being the ratio of wolves to moose. You can try my (admittedly) kludgy code, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker-BestFit.nb

{WolfBirthRateFactorStart,

WolfDeathRateStart,

MooseBirthRateStart,

MooseDeathRateFactorStart,

moStart,

woStart} =

{0.000267409,

0.239821,

0.269755,

0.0113679,

591,

23.};

https://insightmaker.com/insight/2068/Isle-Royale-Predator-Prey-Interactions

Thanks Scott Fortmann-Roe.

I've created a Mathematica file that replicates the model, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker.nb

It allows one to experiment with adjusting the initial number of moose and wolves on the island.

I used steepest descent in Mathematica to optimize the parameters, with my objective data being the ratio of wolves to moose. You can try my (admittedly) kludgy code, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker-BestFit.nb

{WolfBirthRateFactorStart,

WolfDeathRateStart,

MooseBirthRateStart,

MooseDeathRateFactorStart,

moStart,

woStart} =

{0.000267409,

0.239821,

0.269755,

0.0113679,

591,

23.};

- 3 years 3 months ago

#### Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example

##### Maria E Ruwe

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

- 3 years 3 months ago

#### Clone of Isle Royale: Predator/Prey Model for Moose and Wolves

##### Clay Frink

This model illustrates predator prey interactions using real-life data of wolf and moose populations on the Isle Royale. It was "cloned" from a model that InsightMaker provides to its users, at

https://insightmaker.com/insight/2068/Isle-Royale-Predator-Prey-Interactions

Thanks Scott Fortmann-Roe.

I've created a Mathematica file that replicates the model, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker.nb

It allows one to experiment with adjusting the initial number of moose and wolves on the island.

I used steepest descent in Mathematica to optimize the parameters, with my objective data being the ratio of wolves to moose. You can try my (admittedly) kludgy code, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker-BestFit.nb

{WolfBirthRateFactorStart,

WolfDeathRateStart,

MooseBirthRateStart,

MooseDeathRateFactorStart,

moStart,

woStart} =

{0.000267409,

0.239821,

0.269755,

0.0113679,

591,

23.};

https://insightmaker.com/insight/2068/Isle-Royale-Predator-Prey-Interactions

Thanks Scott Fortmann-Roe.

I've created a Mathematica file that replicates the model, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker.nb

It allows one to experiment with adjusting the initial number of moose and wolves on the island.

I used steepest descent in Mathematica to optimize the parameters, with my objective data being the ratio of wolves to moose. You can try my (admittedly) kludgy code, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker-BestFit.nb

{WolfBirthRateFactorStart,

WolfDeathRateStart,

MooseBirthRateStart,

MooseDeathRateFactorStart,

moStart,

woStart} =

{0.000267409,

0.239821,

0.269755,

0.0113679,

591,

23.};

- 3 years 3 months ago

#### Clone of Isle Royale: Predator/Prey Model for Moose and Wolves

##### Allison Zembrodt

This model illustrates predator prey interactions using real-life data of wolf and moose populations on the Isle Royale. It was "cloned" from a model that InsightMaker provides to its users, at

https://insightmaker.com/insight/2068/Isle-Royale-Predator-Prey-Interactions

Thanks Scott Fortmann-Roe.

I've created a Mathematica file that replicates the model, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker.nb

It allows one to experiment with adjusting the initial number of moose and wolves on the island.

I used steepest descent in Mathematica to optimize the parameters, with my objective data being the ratio of wolves to moose. You can try my (admittedly) kludgy code, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker-BestFit.nb

{WolfBirthRateFactorStart,

WolfDeathRateStart,

MooseBirthRateStart,

MooseDeathRateFactorStart,

moStart,

woStart} =

{0.000267409,

0.239821,

0.269755,

0.0113679,

591,

23.};

https://insightmaker.com/insight/2068/Isle-Royale-Predator-Prey-Interactions

Thanks Scott Fortmann-Roe.

I've created a Mathematica file that replicates the model, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker.nb

It allows one to experiment with adjusting the initial number of moose and wolves on the island.

I used steepest descent in Mathematica to optimize the parameters, with my objective data being the ratio of wolves to moose. You can try my (admittedly) kludgy code, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker-BestFit.nb

{WolfBirthRateFactorStart,

WolfDeathRateStart,

MooseBirthRateStart,

MooseDeathRateFactorStart,

moStart,

woStart} =

{0.000267409,

0.239821,

0.269755,

0.0113679,

591,

23.};

- 3 years 2 months ago

#### Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example

##### Patrick Nielsen

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

- 3 years 3 months ago

#### Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death

##### Jake Moore

Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured inhttps://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured inhttps://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:

- 1 year 2 months ago

#### Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example

##### Leah Gillespie

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

- 3 years 3 months ago

#### Clone of A Sleek, non-dimensionalized SIR (Susceptible, Infected, Recovered) model

##### Devon Schramm

This is an example of an SIR (Susceptible, Infected, Recovered) model that has been re-parameterized down to the bare minimum, to illustrated the dynamics possible with the fewest number of parameters.

We're rescaled this SIR model, so that time is given in infection rate-appropriate time units, "rates" are now ratios of rates (with infectivity rate in the denominator), and populations are considered proportions (unfortunately InsightMaker doesn't function properly if I give them all values from 0 to 1, which sum to 1 -- so, at the moment, I give them values that sum to 100, and consider the results percentages).

The new display includes the asymptotics: the three sub-populations will tend to fixed values as time goes to infinity; the infected population goes to zero if the recovery rate is greater than the infectivity rate -- i.e., the disease dies out.

Note the use of a "ghost" stock (for Total Population), which I think is a pretty cool idea. It cuts down on the number of arcs in the model graph.

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-rescaled.nb

We're rescaled this SIR model, so that time is given in infection rate-appropriate time units, "rates" are now ratios of rates (with infectivity rate in the denominator), and populations are considered proportions (unfortunately InsightMaker doesn't function properly if I give them all values from 0 to 1, which sum to 1 -- so, at the moment, I give them values that sum to 100, and consider the results percentages).

The new display includes the asymptotics: the three sub-populations will tend to fixed values as time goes to infinity; the infected population goes to zero if the recovery rate is greater than the infectivity rate -- i.e., the disease dies out.

Note the use of a "ghost" stock (for Total Population), which I think is a pretty cool idea. It cuts down on the number of arcs in the model graph.

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-rescaled.nb

- 3 years 1 month ago

#### Clone of Isle Royale: Predator/Prey Model for Moose and Wolves

##### Benjamin Nguyen

https://insightmaker.com/insight/2068/Isle-Royale-Predator-Prey-Interactions

Thanks Scott Fortmann-Roe.

I've created a Mathematica file that replicates the model, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker.nb

It allows one to experiment with adjusting the initial number of moose and wolves on the island.

I used steepest descent in Mathematica to optimize the parameters, with my objective data being the ratio of wolves to moose. You can try my (admittedly) kludgy code, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker-BestFit.nb

{WolfBirthRateFactorStart,

WolfDeathRateStart,

MooseBirthRateStart,

MooseDeathRateFactorStart,

moStart,

woStart} =

{0.000267409,

0.239821,

0.269755,

0.0113679,

591,

23.};

- 1 year 11 months ago

#### Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example

##### Christopher Milesky

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

- 3 years 3 months ago

#### Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example

##### Rachel Driehaus

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

- 3 years 3 months ago

#### Clone of A Sleek, non-dimensionalized SIR (Susceptible, Infected, Recovered) model

##### Sally Dufek

This is an example of an SIR (Susceptible, Infected, Recovered) model that has been re-parameterized down to the bare minimum, to illustrated the dynamics possible with the fewest number of parameters.

We're rescaled this SIR model, so that time is given in infection rate-appropriate time units, "rates" are now ratios of rates (with infectivity rate in the denominator), and populations are considered proportions (unfortunately InsightMaker doesn't function properly if I give them all values from 0 to 1, which sum to 1 -- so, at the moment, I give them values that sum to 100, and consider the results percentages).

The new display includes the asymptotics: the three sub-populations will tend to fixed values as time goes to infinity; the infected population goes to zero if the recovery rate is greater than the infectivity rate -- i.e., the disease dies out.

Note the use of a "ghost" stock (for Total Population), which I think is a pretty cool idea. It cuts down on the number of arcs in the model graph.

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-rescaled.nb

We're rescaled this SIR model, so that time is given in infection rate-appropriate time units, "rates" are now ratios of rates (with infectivity rate in the denominator), and populations are considered proportions (unfortunately InsightMaker doesn't function properly if I give them all values from 0 to 1, which sum to 1 -- so, at the moment, I give them values that sum to 100, and consider the results percentages).

The new display includes the asymptotics: the three sub-populations will tend to fixed values as time goes to infinity; the infected population goes to zero if the recovery rate is greater than the infectivity rate -- i.e., the disease dies out.

Note the use of a "ghost" stock (for Total Population), which I think is a pretty cool idea. It cuts down on the number of arcs in the model graph.

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-rescaled.nb

- 3 years 3 months ago

#### Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example

##### Donna Odhiambo

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

- 3 years 3 months ago

#### Clone of A Simple SIR (Susceptible, Infected, Recovered) without infection

##### Adam May

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

- 3 years 3 months ago

#### Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example

##### Lizzy Compton

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

- 3 years 3 months ago

#### Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example

##### Matthew Gall

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

- 3 years 3 months ago

#### Clone of Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example

##### Christopher Milesky

They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....

A comparable model in Mathematica is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb

- 3 years 3 months ago

#### Clone of Logistic Growth

##### Samuel Kaelin

This simple model demonstrates logistic growth.The differential equation looks like

y'(t)=by(t)(1-y(t)/K)

where K is the carrying capacity of the quantity y. Alternatively,

y'(t)=by(t) - b/K*y(t)^2

so the growth term suggests exponential growth, but there is a loss term is of the form b/K y(t) -- loss is proportional to population (crowding).

A comparable Mathematica file is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/LogisticGrowth-and-DecayModel.nb

y'(t)=by(t)(1-y(t)/K)

where K is the carrying capacity of the quantity y. Alternatively,

y'(t)=by(t) - b/K*y(t)^2

so the growth term suggests exponential growth, but there is a loss term is of the form b/K y(t) -- loss is proportional to population (crowding).

A comparable Mathematica file is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/LogisticGrowth-and-DecayModel.nb

- 1 year 2 months ago

#### Clone of Isle Royale: Predator/Prey Model for Moose and Wolves

##### Benjamin Nguyen

https://insightmaker.com/insight/2068/Isle-Royale-Predator-Prey-Interactions

Thanks Scott Fortmann-Roe.

I've created a Mathematica file that replicates the model, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker.nb

It allows one to experiment with adjusting the initial number of moose and wolves on the island.

I used steepest descent in Mathematica to optimize the parameters, with my objective data being the ratio of wolves to moose. You can try my (admittedly) kludgy code, at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/Moose-n-Wolf-InsightMaker-BestFit.nb

{WolfBirthRateFactorStart,

WolfDeathRateStart,

MooseBirthRateStart,

MooseDeathRateFactorStart,

moStart,

woStart} =

{0.000267409,

0.239821,

0.269755,

0.0113679,

591,

23.};

- 1 year 11 months ago

#### Clone of Logistic Growth

##### Sean Field

This simple model demonstrates logistic growth.The differential equation looks like

y'(t)=by(t)(1-y(t)/K)

where K is the carrying capacity of the quantity y. Alternatively,

y'(t)=by(t) - b/K*y(t)^2

so the growth term suggests exponential growth, but there is a loss term is of the form b/K y(t) -- loss is proportional to population (crowding).

A comparable Mathematica file is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/LogisticGrowth-and-DecayModel.nb

y'(t)=by(t)(1-y(t)/K)

where K is the carrying capacity of the quantity y. Alternatively,

y'(t)=by(t) - b/K*y(t)^2

so the growth term suggests exponential growth, but there is a loss term is of the form b/K y(t) -- loss is proportional to population (crowding).

A comparable Mathematica file is available at

http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/LogisticGrowth-and-DecayModel.nb

- 1 year 1 month ago

#### Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death

##### Adheke Silas

Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured inhttps://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured inhttps://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:

- 1 year 2 months ago