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Tugas 3 Pemodelan Transportasi Laut_Yopy Anjas
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Here we have a basic SEIR model and we will investigate what changes would be appropriate for modelling the 2019 Coronavirus 

Clone of SEIR Infectious Disease Model for COVID-19
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Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured in
https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:
  1. http://www.nku.edu/~longa/classes/2020spring/mat375/mathematica/SIRModel-MAA.nb
  2. https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model
Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death
Insight diagram

Here we have a basic SEIR model and we will investigate what changes would be appropriate for modelling the 2019 Coronavirus 

Clone of Clone of Clone of Clone of Clone of Clone of Clone of Clone of Clone of Clone of SEIR Infectious Disease Model for COVID-19
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This Model was first developed from the SIR model (Susceptible, Infected, Recovered). It was designed to explore relationship between the government policies regarding the COVID-19 and its influences on the economy as well as well-being of local residents. 

 

Assumptions:

Government policies will be triggered when reported COVID-19 case are 10 or less;

Government policies reduces the infection and economic growth at the same time.

 


Interesting Insights:

In the first two weeks, the infected people showed an exponential growth, in another word, that’s the most important period to control the number of people who got affected. 

 

Clone of Model of COVID-19 Outbreak in Burnie, Tasmania
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The SEIRS(D) model for the purpose of experimenting with the phenomena of viral spread. I use it for COVID-19 simulation.
Clone of SEIR - COVID-19 (v.1)
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Dieses Causal Loop Diagramm (CLD) versucht in vereinfachter Weisse die Wesentliche Dynamik des Mars-CoV-2 zu veranschaulichen. Der Motor hinter den Infektionen ist offensichtlich eine selbstverstärkende Rückkopplungsschleife, und ausschlaggebend in diesem Bezug ist der R-Wert. Wenn der R-Wert unter 1 liegt, dann heisst das, dass eine infizierte Person während des Zeitraums, in dem sie infektiös ist, weniger als eine andere Person infiziert.  Liegt der Wert über 1, dann steckt die Infizierte mehr als eine andere Person an, und das Virus verbreitet sich exponentiell. Die Schleifen, die blaue Pfeile enthalten, sind negative Rückkopplungsschleifen – sie bremsen die Verbreitung des Virus. Das Diagramm suggeriert, dass der R-Wert als Schlüssel zur Kontrolle der Verbreitung des Virus dienen könnte. Sollte der Wert über 1 steigen, so müssten  Schutzmassnahem eingeführt werden. Ist der Wert unter 1, dann sind die negativen Schleifen dominierend und einige Massnahmen könnten gelockert werden. 

Eine Systemische Sicht auf Covid-19
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1 тапсырма
12 months ago
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Modelo epidemiológico simples
SIR: Susceptíveis - Infectados - Recuperados

Dados iniciais do Brasil em 04 Abr 2020
Fonte:
https://www.worldometers.info/coronavirus/country/brazil/
Clone of Modelo SIR simples - Covid 19
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Spring, 2020:

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured in
https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-6, we recover their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:
  * http://www.nku.edu/~longa/classes/2020spring/mat375/mathematica/SIRModel-MAA.nb

  * http://www.nku.edu/~longa/classes/2020spring/mat375/mathematica/SIRModel-MAA-with-Flattening.nb

Key for Lab SIR 2 -- Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) Model for Coronavirus
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Clone of Tugas 3 Pemodelan Transportasi Laut_Yopy Anjas
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Initial data from:
Italian data [link], as of Mar 28
Incubation estimation [link

Model focuses on outbreak dynamics and control, this version ignores symptom onset to hospital admission and the rest of recovery dynamics.
Clone of Italian COVID 19 outbreak control V2
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Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured in
https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:
  1. http://www.nku.edu/~longa/classes/2020spring/mat375/mathematica/SIRModel-MAA.nb
  2. https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model
Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death
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A simple ABM example illustrating how the SEIR model works. It can be a basis for experimenting with learning the impact of human behavior on the spread of a virus, e.g. COVID-19.
Clone of Clone of SEIR ABM MODEL
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SARS-CoV-19 spread in different countries
- please adjust variables accordingly

Italy
  • elderly population (>65): 0.228
  • estimated undetected cases factor: 4-11
  • starting population size: 60 000 000
  • high blood pressure: 0.32 (gbe-bund)
  • heart disease: 0.04 (statista)
  • free intensive care units: 3 100

Germany
  • elderly population (>65): 0.195 (bpb)
  • estimated undetected cases factor: 2-3 (deutschlandfunk)
  • starting population size: 83 000 000
  • high blood pressure: 0.26 (gbe-bund)
  • heart disease: 0.2-0.28 (herzstiftung)
  • free intensive care units: 5 880

France
  • elderly population (>65): 0.183 (statista)
  • estimated undetected cases factor: 3-5
  • starting population size: 67 000 000
  • high blood pressure: 0.3 (fondation-recherche-cardio-vasculaire)
  • heart disease: 0.1-0.2 (oecd)
  • free intensive care units: 3 000

As you wish
  • numbers of encounters/day: 1 = quarantine, 2-3 = practicing social distancing, 4-6 = heavy social life, 7-9 = not caring at all // default 2
  • practicing preventive measures (ie. washing hands regularly, not touching your face etc.): 0.1 (nobody does anything) - 1 (very strictly) // default 0.8
  • government elucidation: 0.1 (very bad) - 1 (highly transparent and educating) // default 0.9
  • Immunity rate (due to lacking data): 0 (you can't get immune) - 1 (once you had it you'll never get it again) // default 0.4

Key
  • Healthy: People are not infected with SARS-CoV-19 but could still get it
  • Infected: People have been infected and developed the disease COVID-19
  • Recovered: People just have recovered from COVID-19 and can't get it again in this stage
  • Dead: People died because of COVID-19
  • Immune: People got immune and can't get the disease again
  • Critical recovery percentage: Chance of survival with no special medical treatment
Clone of SARS-CoV-19 model
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The model represents the interaction between influenza and SARS-CoV-2. The data used is for Catalonia region.
Clone of Influenza and SARS-CoV-2 interaction v1
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Modelling of the SARS-Cov-2 viral outbreak using an SEIR model plus specific extensions to model demand for health and care resources.

The model includes biths and deaths, and migration to accommodate import and export of infected individuals from other areas.

Healthcare resources identifies need for hospital beds and critical care.

The model is uses arrays to reflect the different impacts of modelled parameters by age and sex.
Clone of Infectious Disease Model (Covid)
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SARS-CoV-19 spread in different countries
- please adjust variables accordingly

Italy
  • elderly population (>65): 0.228
  • estimated undetected cases factor: 4-11
  • starting population size: 60 000 000
  • high blood pressure: 0.32 (gbe-bund)
  • heart disease: 0.04 (statista)
  • free intensive care units: 3 100

Germany
  • elderly population (>65): 0.195 (bpb)
  • estimated undetected cases factor: 2-3 (deutschlandfunk)
  • starting population size: 83 000 000
  • high blood pressure: 0.26 (gbe-bund)
  • heart disease: 0.2-0.28 (herzstiftung)
  • free intensive care units: 5 880

France
  • elderly population (>65): 0.183 (statista)
  • estimated undetected cases factor: 3-5
  • starting population size: 67 000 000
  • high blood pressure: 0.3 (fondation-recherche-cardio-vasculaire)
  • heart disease: 0.1-0.2 (oecd)
  • free intensive care units: 3 000

As you wish
  • numbers of encounters/day: 1 = quarantine, 2-3 = practicing social distancing, 4-6 = heavy social life, 7-9 = not caring at all // default 2
  • practicing preventive measures (ie. washing hands regularly, not touching your face etc.): 0.1 (nobody does anything) - 1 (very strictly) // default 0.8
  • government elucidation: 0.1 (very bad) - 1 (highly transparent and educating) // default 0.9
  • Immunity rate (due to lacking data): 0 (you can't get immune) - 1 (once you had it you'll never get it again) // default 0.4

Key
  • Healthy: People are not infected with SARS-CoV-19 but could still get it
  • Infected: People have been infected and developed the disease COVID-19
  • Recovered: People just have recovered from COVID-19 and can't get it again in this stage
  • Dead: People died because of COVID-19
  • Immune: People got immune and can't get the disease again
  • Critical recovery percentage: Chance of survival with no special medical treatment
Clone of SARS-CoV-19 model
Insight diagram
Modelling of the SARS-Cov-2 viral outbreak using an SEIR model plus specific extensions to model demand for health and care resources.

The model includes biths and deaths, and migration to accommodate import and export of infected individuals from other areas.

Healthcare resources identifies need for hospital beds and critical care.

The model is uses arrays to reflect the different impacts of modelled parameters by age and sex.
Clone of Infectious Disease Model (Covid)
Insight diagram
SARS-CoV-19 spread in different countries
- please adjust variables accordingly

Italy
  • elderly population (>65): 0.228
  • estimated undetected cases factor: 4-11
  • starting population size: 60 000 000
  • high blood pressure: 0.32 (gbe-bund)
  • heart disease: 0.04 (statista)
  • free intensive care units: 3 100

Germany
  • elderly population (>65): 0.195 (bpb)
  • estimated undetected cases factor: 2-3 (deutschlandfunk)
  • starting population size: 83 000 000
  • high blood pressure: 0.26 (gbe-bund)
  • heart disease: 0.2-0.28 (herzstiftung)
  • free intensive care units: 5 880

France
  • elderly population (>65): 0.183 (statista)
  • estimated undetected cases factor: 3-5
  • starting population size: 67 000 000
  • high blood pressure: 0.3 (fondation-recherche-cardio-vasculaire)
  • heart disease: 0.1-0.2 (oecd)
  • free intensive care units: 3 000

As you wish
  • numbers of encounters/day: 1 = quarantine, 2-3 = practicing social distancing, 4-6 = heavy social life, 7-9 = not caring at all // default 2
  • practicing preventive measures (ie. washing hands regularly, not touching your face etc.): 0.1 (nobody does anything) - 1 (very strictly) // default 0.8
  • government elucidation: 0.1 (very bad) - 1 (highly transparent and educating) // default 0.9
  • Immunity rate (due to lacking data): 0 (you can't get immune) - 1 (once you had it you'll never get it again) // default 0.4

Key
  • Healthy: People are not infected with SARS-CoV-19 but could still get it
  • Infected: People have been infected and developed the disease COVID-19
  • Recovered: People just have recovered from COVID-19 and can't get it again in this stage
  • Dead: People died because of COVID-19
  • Immune: People got immune and can't get the disease again
  • Critical recovery percentage: Chance of survival with no special medical treatment
Clone of SARS-CoV-19 model
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Model di samping adalah model SEIR yang telah dimodifikasi sehingga dapat digunakan untuk menyimulasikan perkembangan penyebaran COVID-19.

Modified by Rio dan Pras
Clone of SEIR Model for COVID-19 in Indonesia - case study SLEMAN
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This is the second in a series of models that explore the dynamics of and policy impacts on infectious diseases. This basic SIR model explores the impact of a simple test and isolate policy. The first model can be found here.

Clone of Future Learn Basic SIR Model with Sample Testing
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The SEIRS(D) model for the purpose of experimenting with the phenomena of viral spread. I use it for COVID-19 simulation.
Clone of SEIRS MODEL
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This System Model presents the cases of COVID-19 in Puerto Princesa City as of June 3, 2021

Insight Author: Pia Mae M. Palay
Clone of System Dynamic Model of COVID 19 in Puerto Princesa City