A system diagram for the Mojave Desert for an assignment at OSU- RNG 341.

Modeling forest succession in a northeast deciduous forest.

Simple model to illustrate oyster growth based on primary production of Phytoplankton as a state variable, forced by light and nutrients, running for a yearly period.

Phytoplankton growth based on on Steele's and Michaelis-Menten equations), where: 

Primary Production=(([Pmax]*[I]/[Iopt]*exp(1-[I]/[Iopt])*[S])/([Ks]+[S]))

Pmax: Maximum production (d-1)
I: Light energy at depth of interest (uE m-2 s-1)
Iopt: Light energy at which Pmax occurs (uE m-2 s-1)
S: Nutrient concentration (umol N L-1)
Ks: Half saturation constant for nutrient (umol N L-1).

Further developments:
- Nutrients as state variable in cycle with detritus from phytoplankton and oyster biomass.
- Light limited by the concentration of phytoplankton.
- Temperature effect on phytoplankton and Oyster growth.

This model simulates the growth of carp in an aquaculture pond, both with respect to production and environmental effects.

Both the anabolism and fasting catabolism functions contain elements of allometry, through the m and n exponents that reduce the ration per unit body weight as the animal grows bigger.

The 'S' term provides a growth adjustment with respect to the number of fish, so implicitly adds competition (for food, oxygen, space, etc).

 Carp are mainly cultivated in Asia and Europe, and contribute to the world food supply.

Aquaculture currently produces sixty million tonnes of fish and shellfish every year. In May 2013, aquaculture production overtook wild fisheries for human consumption.

This paradigm shift last occurred in the Neolithic period, ten thousand years ago, when agriculture displaced hunter-gatherers as a source of human food.

Aquaculture is here to stay, and wild fish capture (fishing) will never again exceed cultivation.

Recreational fishing will remain a human activity, just as hunting still is, after ten thousand years - but it won't be a major source of food from the seas.

The best way to preserve wild fish is not to fish them.

Marine plastic is rapidly increasing due to increasing production and use of plastic in all economic activities, short use times and long life times of plastic, and large mismanagement of plastic waste. With this, the threat plastic poses to the marine biosphere is also increasing and will continue to increase over a long time into the future. Risk knowledge is limited and risk perception and awareness are not resulting in significant mitigation efforts. The case study will aim at modeling the use and life cycles of plastic and the transport paths that lead to plastic entering the ocean. The models will be used to simulate possible futures based on a scenario approach. The results of these efforts will be visualized with the goal to increase risk awareness.

In Chile, 60% of its population are exposed to levels of Particulate Matter (PM) above international standards. Air Pollution is causing 4,000 premature deaths per year, including health costs over US$8 billion.

WIP Stock Flow representation of Panarchy Adaptive Cycles

Simple model to illustrate oyster growth based on primary production of Phytoplankton as a state variable, forced by light and nutrients, running for a yearly period.

Phytoplankton growth based on on Steele's and Michaelis-Menten equations), where: 

Primary Production=(([Pmax]*[I]/[Iopt]*exp(1-[I]/[Iopt])*[S])/([Ks]+[S]))

Pmax: Maximum production (d-1)
I: Light energy at depth of interest (uE m-2 s-1)
Iopt: Light energy at which Pmax occurs (uE m-2 s-1)
S: Nutrient concentration (umol N L-1)
Ks: Half saturation constant for nutrient (umol N L-1).

Further developments:
- Nutrients as state variable in cycle with detritus from phytoplankton and oyster biomass.
- Light limited by the concentration of phytoplankton.
- Temperature effect on phytoplankton and Oyster growth.

The Logistic Map is a polynomial mapping (equivalently, recurrence relation) of degree 2, often cited as an archetypal example of how complex, chaotic behaviour can arise from very simple non-linear dynamical equations. The map was popularized in a seminal 1976 paper by the biologist Robert May, in part as a discrete-time demographic model analogous to the logistic equation first created by Pierre François Verhulst. 

Mathematically, the logistic map is written

where:

 is a number between zero and one, and represents the ratio of existing population to the maximum possible population at year n, and hence x0 represents the initial ratio of population to max. population (at year 0)r is a positive number, and represents a combined rate for reproduction and starvation. To generate a bifurcation diagram, set 'r base' to 2 and 'r ramp' to 1
To demonstrate sensitivity to initial conditions, try two runs with 'r base' set to 3 and 'Initial X' of 0.5 and 0.501, then look at first ~20 time steps

Fig 3.1 from Jorgen Randers book 2052 a Global Forecast for the Next Forty Years

This model is based off Meadows economic capital with reinforcing growth loop constrained by a renewable resource model.

For Sustainability & Eco Innovation class

Here is the Covid 19 Statistics model based on the Philippines.

Simulate an impact of an asteroid of any Diameter at any given Speed!

This model simulates the growth of carp in an aquaculture pond, both with respect to production and environmental effects.

Both the anabolism and fasting catabolism functions contain elements of allometry, through the m and n exponents that reduce the ration per unit body weight as the animal grows bigger.

The 'S' term provides a growth adjustment with respect to the number of fish, so implicitly adds competition (for food, oxygen, space, etc).

 Carp are mainly cultivated in Asia and Europe, and contribute to the world food supply.

Aquaculture currently produces sixty million tonnes of fish and shellfish every year. In 2011, aquaculture production overtook wild fisheries for human consumption.

This paradigm shift last occurred in the Neolithic period, ten thousand years ago, when agriculture displaced hunter-gatherers as a source of human food.

Aquaculture is here to stay, and wild fish capture (fishing) will never again exceed cultivation.

Recreational fishing will remain a human activity, just as hunting still is, after ten thousand years - but it won't be a major source of food from the seas.

The best way to preserve wild fish is not to fish them.

This model implements the one-dimensional version of the advection-dispersion equation for an estuary. The equation is:

dS/dt = (1/A)d(QS)/dx - (1/A)d(EA)/dx(dS/dx) (Eq. 1)

Where S: salinity (or any other constituent such as chlorophyll or dissolved oxygen), (e.g. kg m-3); t: time (s); A: cross-sectional area (m2); Q: river flow (m3 s-1); x: length of box (m); E: dispersion coefficient (m2 s-1).

For a given length delta x, Adx = V, the box volume. For a set value of Q, the equation becomes:

VdS/dt = QdS - (d(EA)/dx) dS (Eq. 2)

EA/x, i.e. (m2 X m2) / (m s) = E(b), the bulk dispersion coefficient, units in m3 s-1, i.e. a flow, equivalent to Q

At steady state, dS/dt = 0, therefore we can rewrite Eq. 2 for one estuarine box as:

Q(Sr-Se)=E(b)r,e(Sr-Se)-E(b)e,s(Se-Ss) (Eq. 3)

Where Sr: river salinity (=0), Se: mean estuary salinity; Ss: mean ocean salinity

E(b)r,e: dispersion coefficient between river and estuary, and E(b)e,s: dispersion coefficient between the estuary and ocean.

By definition the value of E(b)r,e is zero, otherwise we are not at the head (upstream limit of salt intrusion) of the estuary. Likewise Sr is zero, otherwise we're not in the river. Therefore:

QSe=E(b)e,s(Se-Ss) (Eq. 4)

At steady state

E(b)e,s = QSe/(Se-Ss) (Eq 5)

The longitudinal dispersion simulates the turbulent mixiing of water in the estuary during flood and ebb, which supplies salt water to the estuary on the flood tide, and make the sea a little more brackish on the ebb.

You can use the upper slider to turn off dispersion (set to zero), and see that if the tidal wave did not mix with the estuary water due to turbulence, the estuary would quickly become a freshwater system.

The lower slider allows you to simulate a variable river flow, and understand how dispersion compensates for changes in freshwater input.

A simple model for breeding plants from generation to generation in 3 different locations, with one "yield" variable (e.g. height) and 4 combinations of plants from the parents. Simulation tracks the frequencies of each combination in each generation as well as the overall average height by generation.

Very simple model demonstrating growth of phytoplankton using Steele's equation for potential production and Michaelis-Menten equation for nutrient limitation.

Both light and nutrients (e.g. nitrogen) are modelled as forcing functions, and the model is "over-calibrated" for stability.

The phytoplankton model approximately reproduces the spring-summer diatom bloom and the (smaller) late summer dinoflagellate bloom.
 
Oyster growth is modelled only as a throughput from algae. Further developments would include filtration as a function of oyster biomass, oyster mortality, and other adjustments.